Parental gene:

CHM, ENSBTAG00000009598

Aliases:None
Description:rab proteins geranylgeranyltransferase component A 1 [Source:RefSeq peptide;Acc:NP_001192318]
Organism:Cow (Bos taurus)
Coordinates:X:74152507..74398550(+)


>ENSBTAG00000009598
AGAAGCTACTATGGAGGAAACTGGGCCAGTTTTAGCTTTTCAGGTCTGTTGTCCTGGCTAAAGGAACACCAGGAAAACAG
TGATATTGTGAATGAATGTCCAGCATGGCAAGAGAAGATCCATGAAAATGAAGAAGCTATTGCTCTTAGCAGGACAGACA
AAACCATTCAACATGTGGAAGTGTTTTGTTATGCATGTCAGGATTTGCATGAAGATGTCGAAGAAGCTGGTGCACTACAG
AAAAATCACGCTTCTGTGACATCTGTGAACTGCACCGAAGCTGCAGATTCTGCCTGCCTGCCTGTAGAAGATGAGTCATT
AAGAACTACAAGCTGTGAAATACCGGCAGAACAAACTCCAAGCAGTGATCCAGAGAGAGCCCTAGAAGTAAATGATGTTC
AAGTGACAGGGGAAAAAGAAAACTGTTGTGATGATAACACTTGTGTGCCCTCAACTGCAGAAAAGGAAACAAGTGAAAAT
GTACCTGTGGCCGAAGACACAGCAGAACAGCCAAAGAAAAATCGGATTACTTACTCTCAAATCATTAAAGAAGGCAGGAG
GTTTAATATCGATTTGGTATCAAAGCTATTGTATTCTCGAGGATTGCTGATTGATCTTCTAATCAAATCTAATGTTAGTC
GATATGCAGAGTTCAAAAATATTACCAGGATTCTTGCATTTCGAGAAGGAAGAGTGAAACAGGTTCCTTGCTCCAGAGCA
GATGTCTTTAATAGCAAACAACTTACTATGGTAGAAAAGCGAATGCTAATGAAGTTTCTCACATTTTGTATGGAGTATGA
GGAACATCCTGATGAATATAAAGCCTATGAGGAAATTACATTTTCTGAATATTTAAAAACTCAAAAATTAACCCCCAACC
TCCAATATTTTGTTCTGCACTCAATGGCAATGACATCAGAGACAGGCAGCAGTACCATAGATGGTCTCAAAGCTACTAAG
AACTTTCTTCACTCTCTTGGGCGATATGGCAACACTCCATTTTTATTTCCTTTATATGGTCAAGGAGAACTCCCTCAGTG
TTTCTGCAGAATGTGTGCAGTGTTTGGTGGAATCTATTGTCTTCGCCATTCAGTACAGTGCCTTGTTGTGGATAAAGAAT
CTGGAAAATGTAAAGCAATCATAGATCAGTATGGTCAGAGAATAATCTCTAAGCATTTCCTTGTGGAAGACAGTTATTTG
TCTGAGAACACATGTGCACATGTGCAATACAGGCAGATCTCCAGGGCAATCTTGATTACAGATAGATCTGTTCTCAAAAC
AGATTCAGATCAACAGATTTCCATTTTAACAGTGCCAGCAGAGGAACCAGGAACTTTTGCTGTTCGAGTCATTGAGTTAT
GTTCATCAACAATGACATGCATGAAAGGCTCATATTTGGTTCATTTGACTTGTACATCTTCTAAAACAGCAAGAGAAGAT
TTAGAACCAGTTGTGCAGAAATTGTTTACTCCATATACCGAAACGGAGATAGAAAATGAAGAAATTGAAAAGCCAAGACT
TCTATGGGGTCTTTACTTCAATATGAGAGATTCTTCAGATGTCAACAGGAACACTTATAATGATTTACCATCAAATGTTT
ATGTCTGCTCTGGCCCAGACTGTGCTTTAGGAAATGATAATGCAGTCAAACAGGCTGAAGCACTTTTCCAACAAATCTGC
CCCAACGAAGACTTCTGTCCTCCCCCACCGAATCCTGAAGACATTATCCTTGATGGAGACAGTTTACAACCAGAGGCTTC
AGAATCCAGTGCCTTACCAGAGGCCAGCTCAGAGACTCCCAAAGAAAGCTCAAATCTGAGAAACCCAGAGGAGCCCTCTA
AATAA

Library Parental gene expression (RPM)
SRP017611_brain 7 .31 RPM
SRP017611_kidney 8 .89 RPM
SRP017611_liver 2 .64 RPM
ERP005899_muscle 5 .12 RPM
ERP005899_liver 1 .66 RPM
SRP030211_testis 0 .83 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000010190 ortholog_one2one 1 retrogene
retro_amel_733,
Bos taurus ENSBTAG00000005316 within_species_paralog 1 retrogene
retro_btau_1208,
Canis familiaris ENSCAFG00000017406 ortholog_one2one 1 retrogene
retro_cfam_1873,
Equus caballus ENSECAG00000019201 ortholog_one2one 1 retrogene
retro_ecab_36,
Felis catus ENSFCAG00000030652 ortholog_one2one 1 retrogene
retro_fcat_1744,
Homo sapiens ENSG00000188419 ortholog_one2one 1 retrogene
retro_hsap_56,
Gorilla gorilla ENSGGOG00000022912 ortholog_one2one 1 retrogene
retro_ggor_488,
Loxodonta africana ENSLAFG00000000523 ortholog_one2one 1 retrogene
retro_lafr_441,
Myotis lucifugus ENSMLUG00000011286 ortholog_one2one 1 retrogene
retro_mluc_138,
Macaca mulatta ENSMMUG00000016776 ortholog_one2one 1 retrogene
retro_mmul_460,
Monodelphis domestica ENSMODG00000014364 ortholog_many2many 1 retrogene
retro_mdom_1776,
Mustela putorius furo ENSMPUG00000001194 ortholog_one2one 1 retrogene
retro_mputfur_831,
Mus musculus ENSMUSG00000025531 ortholog_one2one 1 retrogene
retro_mmus_284,
Nomascus leucogenys ENSNLEG00000002762 ortholog_one2one 1 retrogene
retro_nleu_120,
Oryctolagus cuniculus ENSOCUG00000012819 ortholog_one2one 1 retrogene
retro_ocun_893,
Pongo abelii ENSPPYG00000020520 ortholog_one2one 1 retrogene
retro_pabe_215,
Pan troglodytes ENSPTRG00000022071 ortholog_one2one 1 retrogene
retro_ptro_400,
Rattus norvegicus ENSRNOG00000000161 ortholog_one2one 1 retrogene
retro_rnor_981,
Sarcophilus harrisii ENSSHAG00000017568 ortholog_many2many 1 retrogene
retro_shar_127,
Ictidomys tridecemlineatus ENSSTOG00000022111 ortholog_one2one 1 retrogene
retro_itri_870,
Vicugna pacos ENSVPAG00000001963 ortholog_one2one 1 retrogene
retro_vpac_231,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_227 67.65 99.02
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Download FASTA sequences of all ENSBTAG00000009598 retrocopies