RetrogeneDB ID:

retro_mputfur_831

Retrocopy
location
Organism:Ferret (Mustela putorius furo)
Coordinates:GL896953.1:5675554..5677162(-)
Located in intron of:ENSMPUG00000015703
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:CHM
Ensembl ID:ENSMPUG00000001194
Aliases:None
Description:choroideremia (Rab escort protein 1) [Source:HGNC Symbol;Acc:1940]


Retrocopy-Parental alignment summary:






>retro_mputfur_831
ATGGCGGACCAGCTTCCCACAGAGTTTGATGTGGTCATCATAGGGACGGGTCTGCCTGAATCCATCCTTGCAGCTGCGTG
TTCAAGAAGTGGCCAGAGGGTTCTGCATCTCGATTCCAGAAGCTACTATGGAGGAAACTGGGCAAGTTTCAGCTTTTCGG
GATTGCTCTCCTGGTTGAAGGAGTATCAGCAAAACAGTGCCATTGCGGAAGAAAGTACTGCCTCGTGGCAAGGCCTGATC
CATGAAACAGAAGAAGCTGTCACTCTTCGCAAGAAGGACGAAACCATCCAACACACGGAAGTGTTTTGTTATGCCAGTCA
GGATGTGGATGACGGTGTTGACGAGATGGAGGCTCTGCAGAAAAGTCCTTCCTCAGCAACATCCAGCACCACCCCTGACC
CTCTGCATTCCGCATGCTTGCCTGAAGAAACACACTCGTTGCATGCTGCCAGCTATGAAACGCCCGCCAAAGACACTCCA
AAAAGTGGTGGAGAAGTTTCACTGGAAGTAACTGATGTCGAGGACACCTTGGCAAAGGAAGAGTGCTGTGGAGATGAAAG
CCATATACCCGCAGTTTCAGATGGAGATGAAGATGGAAAGAAACCTGTAGAGAAAGACCGCACTGACCAACCAAAGAGAA
AGAAGATTACTTACTCTCAAATAGTTAAAGAAAGCAGGAGGTTTAATATTGATTTGGTATCAAAGCTGCTGTATTCTCAA
GGATTGCTAATTGATCTCTTAATCAAATCAAATGTTAGTCGTTATGCAGAATTTAAAAACGTCACTAGGATTCTTGCGTT
CCGTGAAGGAAAAGTAGAACAGGTGCCTTGTTCCAGAGCAGATGTCTTTAATAGCAGAGAACTCACTATGGTTGAAAAGA
GGATACTGATGAAATTTCTTACGTTTTGTTTAGACTATGAACAACATCCTGATCAATACCAAGCTTTTGTGCAATGCTCA
TTTTCAGAGTACTTACAAACTAAAAAATTAACCCCCAACCTCCAACATTTTGTGCTGCATTCGATTGCAATGACAGAATC
CTCTTGCAGTACCATAGATGGCCTTAAAGCAACGAAAAACTTCCTTCGCTGTCTTGGACGGTTTGGCAACACCCCCTTTT
TATTTCCCTTGTATGGGCAAGGAGAAATTCCCCAGTGTTTCTGCAGGATGTGTGCAGTTTTTGGTGGAATCTATTGTCTT
CGTCACAAAGTCCAATGCCTGGTAGTTGACAAAGATTCTGGAAAATGTAAAGCAATTATAGATCACTTAGGTCAAAGAAT
AAATGCTAAATACTTTATTGTGGAGGACAGTTACCTTTCTGAGGAAACCTGCTCAAATGTGCAGTATAAGCAGATCTCCA
GGGCAGTGCTCATTACGGATCAGTCTATACTAAAGGCAGATTCAGACCAGCAGATTTCCATTTTGGTAGTGCCTCCAGTG
GAATCAGGAACATGTGCCGTTCGTGTCACCGAATTATGTTCTTCAACCATGACGTGCATGAAAGACACCTATCTGGTACA
TCTGGCCTGTTCATCTTCTAAAACAGCAAGAGAAGACTTAGAGTCAGTCGTGAAGAAGTTATTCACCCCATACAGTGAAA
CAGAAGTA

ORF - retro_mputfur_831 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 71.14 %
Parental protein coverage: 99.81 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMADNLPSEFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFSFSGILSWLKEYQENSDIVN
MAD.LP.EFDV..IGTGLPESI.AAACSRSGQRVLH.DSRSYYGGNWASFSFSG.LSWLKEYQ.NS.I..
RetrocopyMADQLPTEFDVVIIGTGLPESILAAACSRSGQRVLHLDSRSYYGGNWASFSFSGLLSWLKEYQQNSAIAE
ParentalESPA-WQEQILENEEAIALSRKDKTIQHVEVFCYASQDLHEDVEEAGALQKNHASVISGNPTEAAHSACL
ES.A.WQ..I.E.EEA..L..KD.TIQH.EVFCYASQD....V.E..ALQK...S..S.......HSACL
RetrocopyESTASWQGLIHETEEAVTLRKKDETIQHTEVFCYASQDVDDGVDEMEALQKSPSSATSSTTPDPLHSACL
ParentalPSEDESLCSVICEVPREQTPSSDLETALEIHDVEVTGEKEKYYDNKTCVKSGSEEETSENVPTEEDTALQ
P.E..SL.....E.P...TP.S..E..LE..DVE.T..KE............S........P.E.D...Q
RetrocopyPEETHSLHAASYETPAKDTPKSGGEVSLEVTDVEDTLAKEECCGDESHIPAVSDGDEDGKKPVEKDRTDQ
ParentalPKKNRITYSQIIREGRKFNIDLVSKLLYSRGLLIDLLIKSNVSRYAEFKNITRILAFREGRVEQVPCSRA
PK...ITYSQI..E.R.FNIDLVSKLLYS.GLLIDLLIKSNVSRYAEFKN.TRILAFREG.VEQVPCSRA
RetrocopyPKRKKITYSQIVKESRRFNIDLVSKLLYSQGLLIDLLIKSNVSRYAEFKNVTRILAFREGKVEQVPCSRA
ParentalDVFNSKQLTMVEKRMLMKFLTFCMEYEKHPDQYKAYEEITFSEYLKTQKLTPSLQYFVLHSIAMTSEKAS
DVFNS..LTMVEKR.LMKFLTFC..YE.HPDQY.A.....FSEYL.T.KLTP.LQ.FVLHSIAMT.E...
RetrocopyDVFNSRELTMVEKRILMKFLTFCLDYEQHPDQYQAFVQCSFSEYLQTKKLTPNLQHFVLHSIAMT-ESSC
ParentalNTIEGLKATKNFLHCLGRYGNTPFLFPLYGQGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAI
.TI.GLKATKNFL.CLGR.GNTPFLFPLYGQGE.PQCFCRMCAVFGGIYCLRH.VQCLVVDK.S.KCKAI
RetrocopySTIDGLKATKNFLRCLGRFGNTPFLFPLYGQGEIPQCFCRMCAVFGGIYCLRHKVQCLVVDKDSGKCKAI
ParentalIDQFGQRIISKHFLVEDSYFSENTCSHVQYRQISRSVLITDRSVLKTDSDQQISILTVPGEEPGTFAVRV
ID..GQRI..K.F.VEDSY.SE.TCS.VQY.QISR.VLITD.S.LK.DSDQQISIL.VP..E.GT.AVRV
RetrocopyIDHLGQRINAKYFIVEDSYLSEETCSNVQYKQISRAVLITDQSILKADSDQQISILVVPPVESGTCAVRV
ParentalIELCPSTMTCMKGTYLVHLTCTSSKTAREDLEPVVRKLFTPYTETEI
.ELC.STMTCMK.TYLVHL.C.SSKTAREDLE.VV.KLFTPY.ETE.
RetrocopyTELCSSTMTCMKDTYLVHLACSSSKTAREDLESVVKKLFTPYSETEV

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Mustela putorius furo was not studied using ChIP-Seq data.

EST - click to see more details

No EST(s) were mapped for retro_mputfur_831 retrocopy.

TSS - click to see more details

Mustela putorius furo was not studied using FANTOM5 data.

Lab - click to see more details

retro_mputfur_831 was not experimentally validated.

Retrocopy orthology:
Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 21 parental genes, and 21 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000101901 retrocopy
retro_amel_733,
Bos taurus ENSBTAG000000095981 retrocopy
retro_btau_227,
Canis familiaris ENSCAFG000000174061 retrocopy
retro_cfam_1873,
Equus caballus ENSECAG000000192011 retrocopy
retro_ecab_36,
Felis catus ENSFCAG000000306521 retrocopy
retro_fcat_1744,
Homo sapiens ENSG000001884191 retrocopy
retro_hsap_56,
Gorilla gorilla ENSGGOG000000229121 retrocopy
retro_ggor_488,
Loxodonta africana ENSLAFG000000005231 retrocopy
retro_lafr_441,
Myotis lucifugus ENSMLUG000000112861 retrocopy
retro_mluc_138,
Macaca mulatta ENSMMUG000000167761 retrocopy
retro_mmul_460,
Monodelphis domestica ENSMODG000000143641 retrocopy
retro_mdom_1776,
Mustela putorius furoENSMPUG00000001194 1 retrocopy
retro_mputfur_831 ,
Mus musculus ENSMUSG000000255311 retrocopy
retro_mmus_284,
Nomascus leucogenys ENSNLEG000000027621 retrocopy
retro_nleu_120,
Oryctolagus cuniculus ENSOCUG000000128191 retrocopy
retro_ocun_893,
Pongo abelii ENSPPYG000000205201 retrocopy
retro_pabe_215,
Pan troglodytes ENSPTRG000000220711 retrocopy
retro_ptro_400,
Rattus norvegicus ENSRNOG000000001611 retrocopy
retro_rnor_981,
Sarcophilus harrisii ENSSHAG000000175681 retrocopy
retro_shar_127,
Ictidomys tridecemlineatus ENSSTOG000000221111 retrocopy
retro_itri_870,
Vicugna pacos ENSVPAG000000019631 retrocopy
retro_vpac_231,




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