RetrogeneDB ID:

retro_ttru_1758

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:scaffold_90604:17718..18779(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RBM17
Ensembl ID:ENSTTRG00000001344
Aliases:None
Description:RNA binding motif protein 17 [Source:HGNC Symbol;Acc:16944]


Retrocopy-Parental alignment summary:






>retro_ttru_1758
AGCCGGAGGACAAAACAAAGTACAGTCCTTGACCCGGTAATCAACCCGAAGCCAGGTGCCTCTTCAGACCAGAGGCAGAT
TGTGGACACCGCGCCGCACGTGGCAGCGAGCCTCACGGATCCGGTTCCCACTGCAGGAGAAGTTTTGATTCCCCTAGCTG
ATGAATATGATCCCATGTTTCCTAACGATTATGAGAAAGTAGTGAAGCGCCAAACAGAGGAGCGACAGAGACAGTGGAAG
CTGGAAAGACAGAAATAGAAGAGAGAGAAAAGAGGCGTAAAGACAGACATGAAGCTAGGGGGTTTTCCAGGCGACCAGAT
TCAGATTCTGATGAAGATTATGAGCCAGAGAGGAAGAAGAGAAGTAGGGGCGGAGCTGCCATTCCACCACCCACTTCTCT
TGTAGAGAAACACAAAGAGTTACTCCGAGACTTTCCTTATGCCGAGGATTCAAGACCTCGCTCACCGTCTTCCAAAGCTG
CTATCCCTCCCCCAGTGTACGAGGAAGAAGACAGACCCAGATCCCCGACCGGCCCCGGCAACTCCTTCCTCCCCAACATG
GTGGCACAGTAGCACATAAAATCATGCAGAAGTACGGCTTCCAGGAAGGCCAGGGTCTTGGGAAGCACGAGCAGGGCTTG
AGCACAGCGCTGTCAGGGGAGAAGACCAGCAAGCGGGGAGGCAAGATCATCGTGGGCGACGCCACTGAGAAAGATGCAAC
CAGGAAGTGGGATTCAAATCCATTAACTGAAATACATAAGTGTCCTACTAAAGTGGTCCTACTAAGGAACATGGTTGGTG
CAGGAGAGGTAGATGAAGACTTGGAAGTTGAAACCAAGGAAGAGTGTGAAAAATATGGCAAAGTTGGAAAATGTGTGATA
TTTGAAATTCCTGGTGCCCCTAATGATGAAGCAGTACGAATATTTTTAGAATTTGAGAGGGTTGAATCAGCAATTAAAGC
TGTTTTTGATCTGAATGGGAGGTATTTTGGTGGACGGGGTGGTCAAAGCATGTTTCTACAATTTGGATAAATTCAGGGTC
TTGGATTTGGCAGAACAAGTG

ORF - retro_ttru_1758 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 87.09 %
Parental protein coverage: 100.0 %
Number of stop codons detected: 0
Number of frameshifts detected: 3


Retrocopy - Parental Gene Alignment:

ParentalSQRTKQSTVLAPVIDLKRGGSSDERQIVDTPPHVAAGLKDPVPSGFSAGEVLIPLADEYDPMFPNDYEKV
S.RTKQSTVL.PVI..K.G.SSD.RQIVDT.PHVAA.L.DPVP....AGEVLIPLADEYDPMFPNDYEKV
RetrocopySRRTKQSTVLDPVINPKPGASSDQRQIVDTAPHVAASLTDPVPT---AGEVLIPLADEYDPMFPNDYEKV
ParentalVKRQREERQRQRE-LERQK-EIEEREKRRKDRHEASGFSRRPDPDSDEDEDYERERRKRSMGGAAIAPPT
VKRQ.EE..RQR...E..K.EIEEREKRRKDRHEA.GFSRRPD..SD.DEDYE.ER.KRS.GGAAI.PPT
RetrocopyVKRQTEE--RQRQ<VEAGKTEIEEREKRRKDRHEARGFSRRPD--SDSDEDYEPERKKRSRGGAAIPPPT
ParentalSLVEKDKELPRDFPYEEDSRPRSQSSKAAIPPPVYEEQDRPRSPTGPGNSFLANM-GGTVAHKIMQKYGF
SLVEK.KEL.RDFPY.EDSRPRS.SSKAAIPPPVYEE.DRPRSPTGPGNSFL.NM.GGTVAHKIMQKYGF
RetrocopySLVEKHKELLRDFPYAEDSRPRSPSSKAAIPPPVYEEEDRPRSPTGPGNSFLPNM<GGTVAHKIMQKYGF
ParentalREGQGLGKHEQGLSTALSVEKTSKRGGKIIVGDATEKDAAKKSDSNPLTEILKCPTKVVLLRNMVGAGEV
.EGQGLGKHEQGLSTALS.EKTSKRGGKIIVGDATEKDA..K.DSNPLTEI.KCPTKVVLLRNMVGAGEV
RetrocopyQEGQGLGKHEQGLSTALSGEKTSKRGGKIIVGDATEKDATRKWDSNPLTEIHKCPTKVVLLRNMVGAGEV
ParentalDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR-VVKACFY
DEDLEVETKEECEKYGKVGKCVIFEIPGAP.DEAVRIFLEFERVESAIKAV.DLNGRYFGGR.VVKACFY
RetrocopyDEDLEVETKEECEKYGKVGKCVIFEIPGAPNDEAVRIFLEFERVESAIKAVFDLNGRYFGGR>VVKACFY
ParentalNLDKFRVLDLAEQV
NLDKFRVLDLAEQV
RetrocopyNLDKFRVLDLAEQV

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Tursiops truncatus was not studied using ChIP-Seq data.

EST - click to see more details

No EST(s) were mapped for retro_ttru_1758 retrocopy.

TSS - click to see more details

Tursiops truncatus was not studied using FANTOM5 data.

Lab - click to see more details

retro_ttru_1758 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 14 parental genes, and 16 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000219512 retrocopies
retro_btau_1057, retro_btau_530,
Canis familiaris ENSCAFG000000052061 retrocopy
retro_cfam_844,
Callithrix jacchus ENSCJAG000000205731 retrocopy
retro_cjac_432,
Equus caballus ENSECAG000000089391 retrocopy
retro_ecab_547,
Erinaceus europaeus ENSEEUG000000130771 retrocopy
retro_eeur_390,
Homo sapiens ENSG000001344531 retrocopy
retro_hsap_1551,
Macropus eugenii ENSMEUG000000113471 retrocopy
retro_meug_438,
Macaca mulatta ENSMMUG000000151522 retrocopies
retro_mmul_1209, retro_mmul_771,
Mus musculus ENSMUSG000000371971 retrocopy
retro_mmus_2855,
Otolemur garnettii ENSOGAG000000156871 retrocopy
retro_ogar_1119,
Pongo abelii ENSPPYG000000020671 retrocopy
retro_pabe_1284,
Pan troglodytes ENSPTRG000000022651 retrocopy
retro_ptro_1044,
Ictidomys tridecemlineatus ENSSTOG000000135911 retrocopy
retro_itri_1376,
Tursiops truncatus ENSTTRG00000001344 1 retrocopy
retro_ttru_1758 ,


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