RetrogeneDB ID: retro_nleu_1895

Retrocopy location

• Organism: Gibbon (Nomascus leucogenys)
• Coordinates: GL397314.1:15407444..15407840(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: GSTM3
• Ensembl ID: ENSNLEG00000003302
• Aliases: None
• Description: None

Sequence

>retro_nleu_1895
GGTGAGACTGAAGAAGGAAAGGTGCCAGGAGACATCAGGGAGGACCAGATGGTGGAATACCACCTGCAGCTGAAGCAGCT
CCACCATGACCCTGACCATGAAACATGGAAGCCTCCATACTCGGAACTGCAACCTGGGCAGCTGAAATATTTCTCCTTGT
TTCTGAGGAAGTCATGGTTTCCAGGGGGAAAGCTCACCTTTTTAGATATTCTTACCTGTGATGTGTTAGATCAGAACTAT
ATGTTTGAGCTCAAGTGCCTGGATGAGTTCCCAAATCTGAGGACTTCCTGCACCACATTGCAGCTTTGGAGGAAAGAGCT
ACCCCTGTGCAATCTGCCTGTTCTTCGGGATGCCAGTCAGCAGCCAGATGGCCCAGTGGGGACCAAGAGCATATGC

Alignment

ORF - retro_nleu_1895 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 54.01 %
• Parental protein coverage: 59.56 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  GETEEEKIRVDIIENQVMDFRTQLIRLCYSSDHEKLKPQYLEELPGQLKQFSMFLGKFSWFAGEKLTFVD
          GETEE.K...DI.E.Q......QL..L....DHE..KP.Y.E..PGQLK.FS.FL.K.SWF.G.KLTF.D
Retrocopy GETEEGKVPGDIREDQMVEYHLQLKQLHHDPDHETWKPPYSELQPGQLKYFSLFLRK-SWFPGGKLTFLD

Parental  FLTYDILDQNRIFDPTCLDEFPNLKA-FMCRFEALEKIAAYIQSD-QFFKMPINNKMAQW-GNKPIC
          .LT.D.LDQN..F...CLDEFPNL...F.....ALE..A...QS...FF.MP....MAQW.G.K.IC
Retrocopy ILTCDVLDQNYMFELKCLDEFPNLRT<FLHHIAALEERATPVQSA<LFFGMPVSSQMAQW<GTKSIC

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Nomascus leucogenys was not studied using RNA-Seq expression data.

ChIP-Seq

Nomascus leucogenys was not studied using ChIP-Seq data.

EST

Nomascus leucogenys was not studied using EST data.

TSS

Nomascus leucogenys was not studied using FANTOM5 data.

Lab

retro_nleu_1895 was not experimentally validated.

Homology

Retrocopy orthology:

Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 16 parental genes, and 23 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000005380	2 retrocopies	retro_chof_1850, retro_chof_1989,
Callithrix jacchus	ENSCJAG00000003168	1 retrocopy	retro_cjac_4,
Erinaceus europaeus	ENSEEUG00000014211	1 retrocopy	retro_eeur_112,
Echinops telfairi	ENSETEG00000005817	2 retrocopies	retro_etel_1074, retro_etel_1910,
Homo sapiens	ENSG00000134202	1 retrocopy	retro_hsap_2419,
Microcebus murinus	ENSMICG00000005185	1 retrocopy	retro_mmur_1571,
Macaca mulatta	ENSMMUG00000008029	2 retrocopies	retro_mmul_610, retro_mmul_941,
Monodelphis domestica	ENSMODG00000001899	1 retrocopy	retro_mdom_331,
Mus musculus	ENSMUSG00000004032	2 retrocopies	retro_mmus_491, retro_mmus_547,
Nomascus leucogenys	ENSNLEG00000003194	2 retrocopies	retro_nleu_1546, retro_nleu_504,
Nomascus leucogenys	ENSNLEG00000003302	1 retrocopy	retro_nleu_1895 ,
Pan troglodytes	ENSPTRG00000001063	2 retrocopies	retro_ptro_1393, retro_ptro_1709,
Rattus norvegicus	ENSRNOG00000047034	1 retrocopy	retro_rnor_963,
Sus scrofa	ENSSSCG00000006821	2 retrocopies	retro_sscr_10, retro_sscr_855,
Tarsius syrichta	ENSTSYG00000006736	1 retrocopy	retro_tsyr_145,
Tursiops truncatus	ENSTTRG00000009682	1 retrocopy	retro_ttru_1828,