RetrogeneDB ID: retro_mmur_1571

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_846:46645..46999(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: GSTM3
• Ensembl ID: ENSMICG00000005185
• Aliases: None
• Description: glutathione S-transferase mu 3 (brain) [Source:HGNC Symbol;Acc:4635]

Sequence

>retro_mmur_1571
TGTGGCCAGACTGAAGGAAAAGAGATTCCAGCGGACGTCTTGGAGAACCAAATAACAGATTTCCACAGGTAACTAATACA
GCTCTGCTCAACCCTGACCATTGAAAAACTGAAGCCTCCATACCTAGAACCACCACGTGAGCAACTGAAGCCATTCTTGT
TCCTGGGGAGATTCTCCAGCTTTCCAGGAGAAAAGCTCACCTTGGTGAATTTTCTCACCTGGGATGTCTTAGATCAGAAC
TGCATGTTTGAGCTCAAGTGCCTGGATGAGTCCCTAAACTTGAAGCCTTTCATGTGCTATGTAGTGGCTTTGGAGAAGAA
AGCTGCCTCCGAGCAGTTTGCCTGCTTCTTCAAG

Alignment

ORF - retro_mmur_1571 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 56.3 %
• Parental protein coverage: 52.89 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  CGDTEEEKIRVDIMENQVMDLRTQLIRLCYNSEHEKLKPQYLEQLPGQLKQFSLFLGKYLWFAGDKLTFV
          CG.TE...I..D..ENQ..D....LI.LC.....EKLKP.YLE....QLK.F.LFLG....F.G.KLT.V
Retrocopy CGQTEGKEIPADVLENQITDFHR*LIQLCSTLTIEKLKPPYLEPPREQLKPF-LFLGRFSSFPGEKLTLV

Parental  DFLTYDVLDQNRMFEPRCLEEFPNLKAFMCRFEALEKIAAYMQSDRFFK
          .FLT.DVLDQN.MFE..CL.E..NLK.FMC...ALEK.AA..Q...FFK
Retrocopy NFLTWDVLDQNCMFELKCLDESLNLKPFMCYVVALEKKAASEQFACFFK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_1571 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_1571 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 15 parental genes, and 21 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000005380	2 retrocopies	retro_chof_1850, retro_chof_1989,
Callithrix jacchus	ENSCJAG00000003168	1 retrocopy	retro_cjac_4,
Erinaceus europaeus	ENSEEUG00000014211	1 retrocopy	retro_eeur_112,
Echinops telfairi	ENSETEG00000005817	2 retrocopies	retro_etel_1074, retro_etel_1910,
Homo sapiens	ENSG00000134202	1 retrocopy	retro_hsap_2419,
Microcebus murinus	ENSMICG00000005185	1 retrocopy	retro_mmur_1571 ,
Macaca mulatta	ENSMMUG00000008029	2 retrocopies	retro_mmul_610, retro_mmul_941,
Monodelphis domestica	ENSMODG00000001899	1 retrocopy	retro_mdom_331,
Mus musculus	ENSMUSG00000004032	2 retrocopies	retro_mmus_491, retro_mmus_547,
Nomascus leucogenys	ENSNLEG00000003302	1 retrocopy	retro_nleu_1895,
Pan troglodytes	ENSPTRG00000001063	2 retrocopies	retro_ptro_1393, retro_ptro_1709,
Rattus norvegicus	ENSRNOG00000047034	1 retrocopy	retro_rnor_963,
Sus scrofa	ENSSSCG00000006821	2 retrocopies	retro_sscr_10, retro_sscr_855,
Tarsius syrichta	ENSTSYG00000006736	1 retrocopy	retro_tsyr_145,
Tursiops truncatus	ENSTTRG00000009682	1 retrocopy	retro_ttru_1828,