RetrogeneDB ID: retro_nleu_1385

Retrocopy location

• Organism: Gibbon (Nomascus leucogenys)
• Coordinates: GL397291.1:20021177..20021456(-)
• Located in intron of: ENSNLEG00000003513

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSNLEG00000004800
• Aliases: None
• Description: None

Sequence

>retro_nleu_1385
GTACACGAACCTCCAAGGAAAATACAGCGATTTACTCTTCTCAAATCAGTGCATATTTACAAGAAGCACAGAGTTCAGTA
TGAAATGAGAACACTTTACAGATGTTTAGAGTTAGAACATCTAACTGGAAGCACAGCAGATGTCTACTTGGAATATATTC
AGCGAAACTTACCTGAAGGGGTTGCCGTGGAAGTAACAAAGACACAATTAGAACAGTTACCAGAACACATCAAGGAGCCA
ATCTGGGAAACACTATCAGAAGAAAAAGAAAGCATAAAG

Alignment

ORF - retro_nleu_1385 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 93.55 %
• Parental protein coverage: 52.54 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  VHEPPRKTERFTLLKSVHIYKKHRVQYEMRTLYRCLELEHVTGSTADVYLEYIQRNLPEGVAMEVTKTQL
          VHEPPRK..RFTLLKSVHIYKKHRVQYEMRTLYRCLELEH.TGSTADVYLEYIQRNLPEGVA.EVTKTQL
Retrocopy VHEPPRKIQRFTLLKSVHIYKKHRVQYEMRTLYRCLELEHLTGSTADVYLEYIQRNLPEGVAVEVTKTQL

Parental  EQLPEHIKEPIWETLSEEKEESK
          EQLPEHIKEPIWETLSEEKE..K
Retrocopy EQLPEHIKEPIWETLSEEKESIK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Nomascus leucogenys was not studied using RNA-Seq expression data.

ChIP-Seq

Nomascus leucogenys was not studied using ChIP-Seq data.

EST

Nomascus leucogenys was not studied using EST data.

TSS

Nomascus leucogenys was not studied using FANTOM5 data.

Lab

retro_nleu_1385 was not experimentally validated.

Homology

Retrocopy orthology:

Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 16 parental genes, and 16 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000001638	1 retrocopy	retro_cfam_598,
Choloepus hoffmanni	ENSCHOG00000006109	1 retrocopy	retro_chof_1964,
Dasypus novemcinctus	ENSDNOG00000006067	1 retrocopy	retro_dnov_2007,
Dipodomys ordii	ENSDORG00000002081	1 retrocopy	retro_dord_412,
Homo sapiens	ENSG00000048544	1 retrocopy	retro_hsap_4157,
Gorilla gorilla	ENSGGOG00000012808	1 retrocopy	retro_ggor_2532,
Microcebus murinus	ENSMICG00000011379	1 retrocopy	retro_mmur_321,
Macaca mulatta	ENSMMUG00000014661	1 retrocopy	retro_mmul_48,
Mus musculus	ENSMUSG00000034729	1 retrocopy	retro_mmus_1654,
Nomascus leucogenys	ENSNLEG00000004800	1 retrocopy	retro_nleu_1385 ,
Oryctolagus cuniculus	ENSOCUG00000016697	1 retrocopy	retro_ocun_1141,
Pongo abelii	ENSPPYG00000016613	1 retrocopy	retro_pabe_3456,
Pan troglodytes	ENSPTRG00000018169	1 retrocopy	retro_ptro_2826,
Rattus norvegicus	ENSRNOG00000022609	1 retrocopy	retro_rnor_2284,
Ictidomys tridecemlineatus	ENSSTOG00000027016	1 retrocopy	retro_itri_1183,
Tursiops truncatus	ENSTTRG00000014063	1 retrocopy	retro_ttru_1203,