RetrogeneDB ID: retro_mmur_321

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: GeneScaffold_2375:1857719..1858031(-)
• Located in intron of: ENSMICG00000016631

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: MRPS10
• Ensembl ID: ENSMICG00000011379
• Aliases: None
• Description: mitochondrial ribosomal protein S10 [Source:HGNC Symbol;Acc:14502]

Sequence

>retro_mmur_321
TTGGACAAGCCTGTTGTAACTATATCTGATGAACCAACAAATGATACAAGTGTCTGTCACTTTTAGTAAAAGGCCATGAC
AAGGTTGTCACGGGCATTTATGCATAGTTGACTGTGTTTGCTGCTACAAAATTTCCATCTCTACTTAATTGCATGAGCTG
CTAAGAAAATAGAGCCATTTACTCTTCGCGAATCAGTGTACTTTTTCAGAATACATAAAATTCAGTATGAAATAAGGACA
CTCTACAGATGTTTAGAGTTGGAACATTTGACTGGGAGTTCAGCAGATGTCTGCAGAACTTACCTGAGCAAG

Alignment

ORF - retro_mmur_321 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 56.48 %
• Parental protein coverage: 52.24 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  LTKPTITISDEP-DTLYKRLSVLVKGHDKAVLDSYEYFAVLAAKE-LGISIKVHE-PPRKIERFTLLKSV
          L.KP..TISDEP....YK.LS.LVKGHDK.V...Y....V.AA.....IS...HE....KIE.FTL..SV
Retrocopy LDKPVVTISDEP<NK*YKCLSLLVKGHDKVVTGIYA*LTVFAATK<ISIST*LHE<AAKKIEPFTLRESV

Parental  HIFKKHRVQYEMRTLYRCLELEHLTGSTADVYLEYIQR
          ..F..H..QYE.RTLYRCLELEHLTGS.ADV...Y...
Retrocopy YFFRIHKIQYEIRTLYRCLELEHLTGSSADVCRTYLSK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_321 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_321 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 12 parental genes, and 12 retrocopies.

Species	Parental gene accession	Retrocopies number
Dipodomys ordii	ENSDORG00000002081	1 retrocopy	retro_dord_412,
Homo sapiens	ENSG00000048544	1 retrocopy	retro_hsap_4157,
Gorilla gorilla	ENSGGOG00000012808	1 retrocopy	retro_ggor_2532,
Microcebus murinus	ENSMICG00000011379	1 retrocopy	retro_mmur_321 ,
Macaca mulatta	ENSMMUG00000014661	1 retrocopy	retro_mmul_48,
Mus musculus	ENSMUSG00000034729	1 retrocopy	retro_mmus_1654,
Nomascus leucogenys	ENSNLEG00000004800	1 retrocopy	retro_nleu_1385,
Oryctolagus cuniculus	ENSOCUG00000016697	1 retrocopy	retro_ocun_1141,
Pongo abelii	ENSPPYG00000016613	1 retrocopy	retro_pabe_3456,
Pan troglodytes	ENSPTRG00000018169	1 retrocopy	retro_ptro_2826,
Rattus norvegicus	ENSRNOG00000022609	1 retrocopy	retro_rnor_2284,
Ictidomys tridecemlineatus	ENSSTOG00000027016	1 retrocopy	retro_itri_1183,