RetrogeneDB - Retrocopy retro_ttru

                        
>retro_ttru_1203
ATGGCGGCGCGAGCAGCGTTTGGGCCCCTGGGATGCGTCTCTGGCAGGTTCGAGGAATTTTTCTGTATGCAGTTATAGGA

GCAGTACAGCCAAAAATGGTGGCATTCTTCTCACCAATATGAAGTGGGTACAGTTTTCAAACCTACACATTGATGTTCCC

AAGGATTTGCCCAAGCTTACGATAACCATTTAGGATGAACCAGACACGTTATATAAGTGACTATCAGTTTTAGTAAAAGG

CCATGATAAGGTTGTATTGGACAGTTATGAATATTTGTTGCACTTGCTGCTAAAGAACTTGGTATCTCTGTTAAAGTACA

TGAACCTCCAAGGAAAATTTTACTCTTCTCA

ORF - retro_ttru_1203 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

Percent Identity:	84.43 %
Parental protein coverage:	59.5 %
Number of stop codons detected:	2
Number of frameshifts detected:	3

Retrocopy - Parental Gene Alignment:

                                ParentalMAARTAFGPLG-RRLWQ-GSRNFSVCSSRSSTAKNGGLLLSTNMKWVQFSNLHVDVPKDLTKPTITVSDE
MAAR.AFGPLG..RLWQ.GSRNFSVCS.RSSTAKNGG.LL.TNMKWVQFSNLH.DVPKDL.K.TIT..DE
RetrocopyMAARAAFGPLG<MRLWQ<GSRNFSVCSYRSSTAKNGGILL-TNMKWVQFSNLHIDVPKDLPKLTITI*DE
ParentalPDTLYKRLSVLVKGHDKAVLDSYEY-FAALAAKELGISVKVHEPPRKIERFT
PDTLYK.LSVLVKGHDK.VLDSYEY.F.ALAAKELGISVKVHEPPRKI..F.
RetrocopyPDTLYK*LSVLVKGHDKVVLDSYEY<FVALAAKELGISVKVHEPPRKILLFS

                            

                            Legend:
                            
                                *Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide

                        

RNA-Seq - click to see more details

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Tursiops truncatus was not studied using ChIP-Seq data.

EST - click to see more details

No EST(s) were mapped for retro_ttru_1203 retrocopy.

TSS - click to see more details

Tursiops truncatus was not studied using FANTOM5 data.

Lab - click to see more details

retro_ttru_1203 was not experimentally validated.

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:

Parental genes homology involve 8 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000001638	1 retrocopy	retro_cfam_598,
Choloepus hoffmanni	ENSCHOG00000006109	1 retrocopy	retro_chof_1964,
Dasypus novemcinctus	ENSDNOG00000006067	1 retrocopy	retro_dnov_2007,
Macaca mulatta	ENSMMUG00000014661	1 retrocopy	retro_mmul_48,
Mus musculus	ENSMUSG00000034729	1 retrocopy	retro_mmus_1654,
Nomascus leucogenys	ENSNLEG00000004800	1 retrocopy	retro_nleu_1385,
Rattus norvegicus	ENSRNOG00000022609	1 retrocopy	retro_rnor_2284,
Tursiops truncatus	ENSTTRG00000014063	1 retrocopy	retro_ttru_1203 ,

	RetrogeneDB ID:	retro_ttru_1203
Retrocopy location	Organism:	*Dolphin (Tursiops truncatus)*
	Coordinates:	scaffold_107087:7342..7693(-)
	Located in intron of:	None
Retrocopy information	Ensembl ID:	None
	Aliases:	None
	Status:	NOVEL
Parental gene information	Parental gene summary:
	Parental gene symbol:	MRPS10
	Ensembl ID:	ENSTTRG00000014063
	Aliases:	None
	Description:	mitochondrial ribosomal protein S10 [Source:HGNC Symbol;Acc:14502]

Parental	MAARTAFGPLG-RRLWQ-GSRNFSVCSSRSSTAKNGGLLLSTNMKWVQFSNLHVDVPKDLTKPTITVSDE
	MAAR.AFGPLG..RLWQ.GSRNFSVCS.RSSTAKNGG.LL.TNMKWVQFSNLH.DVPKDL.K.TIT..DE
Retrocopy	MAARAAFGPLG<MRLWQ<GSRNFSVCSYRSSTAKNGGILL-TNMKWVQFSNLHIDVPKDLPKLTITI*DE

Parental	PDTLYKRLSVLVKGHDKAVLDSYEY-FAALAAKELGISVKVHEPPRKIERFT
	PDTLYK.LSVLVKGHDK.VLDSYEY.F.ALAAKELGISVKVHEPPRKI..F.
Retrocopy	PDTLYK*LSVLVKGHDKVVLDSYEY<FVALAAKELGISVKVHEPPRKILLFS

*	Stop codon
>	Forward frameshift by one nucleotide
<	Reverse frameshift by one nucleotide

RetrogeneDB ID:

retro_ttru_1203