RetrogeneDB ID:

retro_mluc_1396

Retrocopy
location
Organism:Microbat (Myotis lucifugus)
Coordinates:GL429830:5593684..5595712(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSMLUG00000029550
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:PAPOLA
Ensembl ID:ENSMLUG00000010922
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_mluc_1396
ATGCCATTTCCAGTTACAATGCAGGGATCACAGCAAACACAGCCGCCACAGAAGCACTATGGCATTACCTCTCCTATCAG
CTTAGCAGCCCCCAAGGAGACCGACTGCCTGCTTACACAGAAACTAATTGAGACTCTGAAACCCTATGGGGTTTTTGAAG
AAGAAGAGGAACTGCAGCACAGGATTTTAATTTTGGCAAAATTAAATAACCTGGTAAAAGAGTGGATACGAGAAATCAGT
GAAAGCAAGAATCTTCCACAATCTGTAATTGAAAATGTTGGAGGAAAAATTTTTACATTTGGATCTTACAGATTAGGAGT
ACACACAAAAGGTGCCGATATTGATGCGTTGTGTGTTGCACCAAGGCATGTTGATCGAAGTGACTTTTTCACCTCATTCT
ATGGTAAGTTGAAATTACAGGAAGAAGTAAAAGATTTAAGAGCTGTTGAAGAGGCATTTGTGCCAGTTATCAAACTGTGT
TTTGATGGGATAGAGATTGATATTTTATTTGCAAGATTAGCACTACAGACTATTCCAGAAGACTTGGACTTACGAGATGA
CAGTCTGCTTAAAAATTTAGATATAAGATGCATAAGAAGTCTTAACGGTTGCAGGGTAACCGATGAAATTTTACACCTAG
TACCAAACATTGACAACTTCAGGTTAACTCTGAGAGCTATCAAACTGTGGGCCAAACGCCACAACATCTATTCCAATATA
TTAGGTTTCCTCGGTGGTGTTTCCTGGGCTATGCTAGTAGCAAGAACTTGCCAGCTTTATCCAAATGCAATAGCATCAAC
TCTTGTACATAAATTTTTCTTGGTATTTTCTAAATGGGAATGGCCAAATCCAGTGCTATTGAAACAGCCTGAAGAATGCA
ATCTTAATTTGCCTGTATGGGACCCAAGGGTAAACCCCAGTGATAGGTACCATCTTATGCCTATAATTACACCAGCATAC
CCACAGCAGAACTCTACGTACAATGTGTCCGTTTCGACACGGATGGTCATGGTTGAGGAGTTTAAACAAGGTCTTGATAT
CACAGATGAAATTTTGCTGAGTAAGGGAGAGTGGTCCAAACTTTTTGAAGCTCCAAACTTCTTTCAAAAGTACAAGCATT
ATATTGTACTTCTAGCAAGTGCACCAACAGAAAAACAACGCCTAGAATGGGTGGGCTTGGTGGAATCGAAAATTCGAATC
TTGGTTGGAAATTTGGAGAAGAATGAATTTATTACACTGGCTCATGTGAATCCCCAGTCATTTCCAGCACCCAAAGAAAA
TCCTGACAAGGAAGAATTTCGCACGATGTGGGTGATTGGATTAGTGTTTAAAAAAACGGAAAACTCTGAAAATCTCAGTG
TTGATCTCACCTATGATATTCAGTCCTTCACAGATACAGTTTACAGGCAAGCAATAAACAGCAAGATGTTTGAGGTGGAC
ATGAAAATTGCTGCAATGCATGTAAAAAGAAAGCAACTCCATGAACTACTACCTAATCATGTGCTTCAAAAAAAGAAAAA
GCATTCAACAGAAGGTGTCAGATTGACACCTCTGAATGAGAACAGCCTCGACTTGTCTATGGACAGTGATAACAGCATGT
CTGTGCCTTCACCTACTAGTGCTATGAAGACCAGTCCATTGAACAGTTCTGGCAGCTCTCAGGGAAACAGTCCTGCTCCA
GCTGTGACAGCAGCATCTGTGATCAACGTCCAGGCCGCCGAAGTTCCTGCGCCACAAGTGGATTCCAGTGAAAGCTCAGG
GGGCAAGGGAATTGGTTTGACAGGTACATCGAGCGAGAGCATTCCTCAAACTGCCACACAGCCAGCCATTTCATCACCAC
CAAAGCCTGCGGTCTCCAGAGTGGTTTCTGCAACACGCCTGGTCAACCCACCACCACGACCTTCAGGAAATGCAGCAACA
AAAATACCTAGTCCCACGGGAGGGGTCAAGAGGAAATCCTCACCTCACAGAGAAGAAAATCCCAAGAAAATCAAAACAGA
AGAGGAACAACTTGATACAGAGACAAGT

ORF - retro_mluc_1396 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 91.42 %
Parental protein coverage: 90.66 %
Number of stop codons detected: 0
Number of frameshifts detected: 0


Retrocopy - Parental Gene Alignment:

ParentalMPFPVTTQGSQQTQPPQKHYGITSPISLAAPKETDCLLTQKLIETLKPYGVFEEEEELQRRILILGKLNN
MPFPVT.QGSQQTQPPQKHYGITSPISLAAPKETDCLLTQKLIETLKPYGVFEEEEELQ.RILIL.KLNN
RetrocopyMPFPVTMQGSQQTQPPQKHYGITSPISLAAPKETDCLLTQKLIETLKPYGVFEEEEELQHRILILAKLNN
ParentalLVKEWIREISESKNLPQSVIENVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDRSDFFTSFYDKLKLQ
LVKEWIREISESKNLPQSVIENVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDRSDFFTSFY.KLKLQ
RetrocopyLVKEWIREISESKNLPQSVIENVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDRSDFFTSFYGKLKLQ
ParentalEEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRCIRSLNGCRVTDEI
EEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRCIRSLNGCRVTDEI
RetrocopyEEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRCIRSLNGCRVTDEI
ParentalLHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVARTCQLYPNAIASTLVHKFFLVFSKWE
LHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVARTCQLYPNAIASTLVHKFFLVFSKWE
RetrocopyLHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVARTCQLYPNAIASTLVHKFFLVFSKWE
ParentalWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTYNVSVSTRMVMVEEFKQGLAITDE
WPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTYNVSVSTRMVMVEEFKQGL.ITDE
RetrocopyWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTYNVSVSTRMVMVEEFKQGLDITDE
ParentalILLSKGEWSKLFEAPNFFQKYKHYIVLLASAPTEKQRLEWVGLVESKIRILVGSLEKNEFITLAHVNPQS
ILLSKGEWSKLFEAPNFFQKYKHYIVLLASAPTEKQRLEWVGLVESKIRILVG.LEKNEFITLAHVNPQS
RetrocopyILLSKGEWSKLFEAPNFFQKYKHYIVLLASAPTEKQRLEWVGLVESKIRILVGNLEKNEFITLAHVNPQS
ParentalFPAPKENPDKEEFRTMWVIGLVFKKTENSENLSVDLTYDIQSFTDTVYRQAINSKMFEVDMKIAAMHVKR
FPAPKENPDKEEFRTMWVIGLVFKKTENSENLSVDLTYDIQSFTDTVYRQAINSKMFEVDMKIAAMHVKR
RetrocopyFPAPKENPDKEEFRTMWVIGLVFKKTENSENLSVDLTYDIQSFTDTVYRQAINSKMFEVDMKIAAMHVKR
ParentalKQLHELLPNHVLQKKKKHSTEGVRLTPLNENSLDLSMDSDNSMSVPSPTSAMKTSPLNSS----GSSQGR
KQLHELLPNHVL.....HSTEGVRLTPLNENSLDLSMDSDNSMSVPSPTSAMKTSPLNSS....G.S...
RetrocopyKQLHELLPNHVLXXXXXHSTEGVRLTPLNENSLDLSMDSDNSMSVPSPTSAMKTSPLNSSGSSQGNSPAP
ParentalNSPAPAVTAASVTNVQAAEVPAPQVDSSESSG--GTSNESIPQTATQPAISSPPKPAVSRVVSATRLVNP
...A..V.......V.A..V...........G..GTS.ESIPQTATQPAISSPPKPAVSRVVSATRLVNP
RetrocopyAVTAASVINVQAAEVPAPQVDSSESSGGKGIGLTGTSSESIPQTATQPAISSPPKPAVSRVVSATRLVNP
ParentalPPRPSGNAATKIPSPTGGVKRKSSPHREESPKKTKTEEDETSEDAN
PPRPSGNAATKIPSPTGGVKRKSSPHREE.PKK.KTEE........
RetrocopyPPRPSGNAATKIPSPTGGVKRKSSPHREENPKKIKTEEEQLDTETS

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Myotis lucifugus was not studied using ChIP-Seq data.

EST - click to see more details

Myotis lucifugus was not studied using EST data.

TSS - click to see more details

Myotis lucifugus was not studied using FANTOM5 data.

Lab - click to see more details

retro_mluc_1396 was not experimentally validated.

Retrocopy orthology:
Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 20 parental genes, and 22 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000141421 retrocopy
retro_amel_517,
Bos taurus ENSBTAG000000040541 retrocopy
retro_btau_1078,
Canis familiaris ENSCAFG000000177831 retrocopy
retro_cfam_1783,
Callithrix jacchus ENSCJAG000000065122 retrocopies
retro_cjac_1763, retro_cjac_543,
Homo sapiens ENSG000000900601 retrocopy
retro_hsap_30,
Gorilla gorilla ENSGGOG000000062871 retrocopy
retro_ggor_202,
Loxodonta africana ENSLAFG000000009461 retrocopy
retro_lafr_895,
Myotis lucifugus ENSMLUG00000010922 1 retrocopy
retro_mluc_1396 ,
Macaca mulatta ENSMMUG000000186101 retrocopy
retro_mmul_1675,
Monodelphis domestica ENSMODG000000128872 retrocopies
retro_mdom_1714, retro_mdom_1916,
Mustela putorius furoENSMPUG000000030541 retrocopy
retro_mputfur_1375,
Mus musculus ENSMUSG000000211111 retrocopy
retro_mmus_37,
Nomascus leucogenys ENSNLEG000000006251 retrocopy
retro_nleu_2771,
Otolemur garnettii ENSOGAG000000046111 retrocopy
retro_ogar_987,
Procavia capensis ENSPCAG000000041991 retrocopy
retro_pcap_91,
Pongo abelii ENSPPYG000000061281 retrocopy
retro_pabe_3113,
Pan troglodytes ENSPTRG000000067041 retrocopy
retro_ptro_2595,
Pteropus vampyrus ENSPVAG000000139251 retrocopy
retro_pvam_360,
Rattus norvegicus ENSRNOG000000048271 retrocopy
retro_rnor_863,
Vicugna pacos ENSVPAG000000064641 retrocopy
retro_vpac_378,


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