Parental gene:

PAPOLA, ENSCJAG00000006512

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:10:122182783..122246192(+)


>ENSCJAG00000006512
ATGCCGTTTCCAGTTACAACACAGGGATCACAACAAACACAACCGCCACAGAAGCACTATGGCATCACTTCTCCTATCAG
CTTAGCAGCCCCCAAGGAGACTGACTGCATACTTACACAGAAACTAATTGAGACACTGAAACCCTTTGGGGTTTTTGAAG
AGGAAGAGGAACTGCAGCGCAGGATTCTAATTTTGGGAAAACTAAATAACCTGGTAAAAGAGTGGATACGAGAAATCAGT
GAAAGCAAGAATCTTCCACAATCTGTAATTGAAAATGTTGGAGGAAAAATTTTTACATTTGGATCTTACAGGTTAGGCGT
ACATACAAAAGGTGCTGATATTGATGCGTTGTGTGTTGCACCAAGACATGTTGATCGAAGTGACTTTTTCACCTCATTCT
ATGATAAGTTGAAATTACAGGAAGAAGTAAAAGATTTAAGAGCTGTTGAAGAGGCATTTGTACCAGTTATTAAACTCTGT
TTTGATGGGATAGAGATTGATATTTTGTTTGCAAGATTAGCACTGCAGACAATTCCAGAAGATCTGGACCTACGAGATGA
CAGTCTGCTTAAAAATTTAGATATAAGATGTATAAGAAGTCTTAACGGTTGCAGGGTAACCGATGAAATTTTACATCTAG
TACCAAACATTGACAACTTCAGGTTAACTCTGAGAGCTATCAAACTATGGGCCAAACGCCACAACATCTATTCCAATATA
TTAGGTTTCCTCGGTGGTGTTTCCTGGGCTATGCTAGTAGCAAGAACTTGCCAGCTTTATCCAAATGCAATAGCATCAAC
ACTTGTACATAAATTTTTCTTGGTATTTTCTAAATGGGAATGGCCAAATCCCGTGCTATTGAAACAGCCTGAAGAATGCA
ATCTTAATTTGCCTGTATGGGACCCAAGGGTAAATCCCAGTGATAGGTACCATCTTATGCCTATAATTACACCAGCATAC
CCACAACAGAACTCCACGTACAATGTGTCCGTTTCAACACGGATGGTCATGGTTGAGGAGTTTAAACAAGGTCTTGCTAT
CACAGATGAAATTTTGCTGAGTAAGGCAGAGTGGTCCAAACTTTTTGAAGCTCCAAACTTCTTTCAAAAGTACAAGCATT
ATATTGTACTTCTAGCAAGTGCACCAACAGAAAAACAACGCCTAGAATGGGTGGGCTTGGTGGAATCAAAAATCCGAATC
CTAGTTGGAAGCTTGGAGAAGAATGAATTTATTACACTGGCTCATGTGAATCCCCAGTCATTTCCAGCACCCAAAGAAAA
TCCTGACAAGGAAGAATTTCGCACCATGTGGGTGATTGGGTTAGTGTTTAAAAAAACAGAAAACTCTGAAAACCTCAGTG
TTGATCTCACCTATGATATTCAGTCTTTCACAGATACAGTTTATAGGCAAGCAATAAACAGCAAGATGTTTGAGGTGGAT
ATGAAAATTGCTGCAATGCATGTAAAAAGAAAGCAACTCCATCAACTACTACCTAATCATGTGCTTCAGAAAAAGAAAAA
GCATTCAACAGAAGGTGTCAAATTGACAGCTCTCAATGACAGCAGCCTCGACTTGTCTATGGACAGTGATAACAGCATGT
CTGTGCCTTCACCTACTAGTGCTACGAAGACCAGTCCATTGAGCAGTTCTGGCAGCTCTCAGGGCAGAAACAGTCCTGCT
CCAGCTGTAACAGCAGCATCTGTGACCAACATACAGGCTACTGAAGTTTCTGTGCCACAAGTAAATTCCAGTGAAAGCTC
AGGGGGTACATCGAGTGAAAGCATTCCTCAAACTGCCACACAACCAGCCATTTCTCCACCACCAAAGCCTACGGTCTCCA
GAGTTGTTTCTTCAACACGTCTGGTAAACCCACCACCTAGATCTTCAGGAAATGCAGCAACTTCAGGAAATGCAGCAACA
AAAATACCTACTCCTATAGTAGGAGTCAAGAGGACATCCTCACCTCATAAAGAAGAGAGTCCCAAGAAAACCAAAACAGA
AGAGGATGAAACAAGTGAAGATGCTAACTGTCTTGCTTTGAGTGGACATGATAAAACAGAAGCAAAGGAACAACTTGATA
CAGAGACAAGTACAACTCAATCAGAAACTATTCAGACAGCGGCTTCTGTGTTGGCCTCTCAGAAAACATCCAGTACAGAC
CTTTCTGATATCCCTGCTCTCCCTGCAAATCCTATTCCTGTTATCAAGAATTCAATAAAACTGAGATTGAATCGGTAA

Library Parental gene expression (RPM)
SRP051959_colon 99 .18 RPM
SRP051959_heart 79 .07 RPM
SRP051959_kidney 99 .35 RPM
SRP051959_liver 87 .49 RPM
SRP051959_lung 113 .47 RPM
SRP051959_lymph_node 137 .71 RPM
SRP051959_skeletal_muscle 58 .79 RPM
SRP051959_spleen 114 .77 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000014142 ortholog_one2one 1 retrogene
retro_amel_517,
Bos taurus ENSBTAG00000004054 ortholog_one2one 1 retrogene
retro_btau_1078,
Canis familiaris ENSCAFG00000017783 ortholog_one2one 1 retrogene
retro_cfam_1783,
Homo sapiens ENSG00000090060 ortholog_one2one 1 retrogene
retro_hsap_30,
Gorilla gorilla ENSGGOG00000006287 ortholog_one2one 1 retrogene
retro_ggor_202,
Myotis lucifugus ENSMLUG00000010922 ortholog_one2one 1 retrogene
retro_mluc_1396,
Macaca mulatta ENSMMUG00000018610 ortholog_one2one 1 retrogene
retro_mmul_1675,
Monodelphis domestica ENSMODG00000012887 ortholog_one2many 2 retrogenes
retro_mdom_1714, retro_mdom_1916,
Mustela putorius furo ENSMPUG00000003054 ortholog_one2one 1 retrogene
retro_mputfur_1375,
Mus musculus ENSMUSG00000021111 possible_ortholog 1 retrogene
retro_mmus_37,
Nomascus leucogenys ENSNLEG00000000625 ortholog_one2one 1 retrogene
retro_nleu_2771,
Otolemur garnettii ENSOGAG00000004611 ortholog_one2one 1 retrogene
retro_ogar_987,
Pongo abelii ENSPPYG00000006128 ortholog_one2one 1 retrogene
retro_pabe_3113,
Pan troglodytes ENSPTRG00000006704 ortholog_one2one 1 retrogene
retro_ptro_2595,
Pteropus vampyrus ENSPVAG00000013925 ortholog_one2one 1 retrogene
retro_pvam_360,
Vicugna pacos ENSVPAG00000006464 ortholog_one2one 1 retrogene
retro_vpac_378,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_543 90.02 72.73
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2. retro_cjac_1763 84.64 100.00
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Download FASTA sequences of all ENSCJAG00000006512 retrocopies