RetrogeneDB ID: | retro_dnov_1075 | ||
Retrocopy location | Organism: | Armadillo (Dasypus novemcinctus) | |
| Coordinates: | scaffold_143911:4322..4779(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | ZCRB1 | ||
| Ensembl ID: | ENSDNOG00000010107 | ||
| Aliases: | None | ||
| Description: | zinc finger CCHC-type and RNA binding motif 1 [Source:HGNC Symbol;Acc:29620] |
Retrocopy-Parental alignment summary:
>retro_dnov_1075
ATGAGTGCTGGATTGGTTCCAGGTAAAAGGGTGGCATGTATATCCAACTTATCTTCACTGACAAACACTACTTTATCCTG
GATGTTTTCCAAGTGTGTCAAGGTTGTAGAAGTTATTGTATGAAAGAAAGCAGTACTGAGAAGAGTAAAGGGTTGGGCTT
ATTTTCTTTTTAAATAGGAATCTGCACAAAACTGTACCAGGCCATTAAATAATAAATGGTTATTCGGTCGAGTAATAAAA
GGAACCATTACTATTGACAACTAAAAAGCAGCTGAATTCATCTCAAGGTGAAACTACTCTGATAAATCTAGGTCTAAAGA
ATGTCAGGAAAGTGGGCACCCAGGTTATACCTGCCCTGAAAATGTGCATGAAGGATATGAACAGAGAGAGAGTGAAAATC
CCAGAACCAGAAGAAGAAAGTGAGGAATTAGAAGAAAATGAAGATGAAGGTGAAGAT
ORF - retro_dnov_1075 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 51.27 % |
| Parental protein coverage: | 71.16 % |
| Number of stop codons detected: | 2 |
| Number of frameshifts detected: | 4 |
Retrocopy - Parental Gene Alignment:
| Parental | MSGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTI-MKDKDTRKSKG-VAFILFLDK-ESAQNC |
| MS.GL.P.K.....SNL..SLTN..L...FSK..KVV.V...MK...T.KSKG.V..I.FL...ESAQNC | |
| Retrocopy | MSAGLVPGKRVACISNLS-SLTNTTLSWMFSKCVKVVEVIV<MKESSTEKSKG<VGLIFFLNR<ESAQNC |
| Parental | TRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYEC-GSGHLSYACPKNMLGGREPPKKKEKK |
| TR..NNK.LFGRVIK..I.IDN..AAEFI.R.NY.DKS...EC..SGH..Y.CP.N...G.E........ | |
| Retrocopy | TRPLNNKWLFGRVIKGTITIDN*KAAEFISR*NYSDKSRSKECQESGHPGYTCPENVHEGYEQRESENPR |
| Parental | EKKK-IPEPEEEIEEVEE |
| .......E.EE...E.E. | |
| Retrocopy | TRRR>SEELEENEDEGED |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP012922_ascending_colon | 0 .00 RPM | 9 .14 RPM |
| SRP012922_cerebellum | 0 .27 RPM | 14 .57 RPM |
| SRP012922_heart | 0 .00 RPM | 9 .75 RPM |
| SRP012922_kidney | 0 .00 RPM | 12 .59 RPM |
| SRP012922_liver | 0 .00 RPM | 5 .26 RPM |
| SRP012922_lung | 0 .00 RPM | 14 .51 RPM |
| SRP012922_quadricep_muscle | 0 .00 RPM | 12 .81 RPM |
| SRP012922_spleen | 0 .00 RPM | 13 .39 RPM |
Dasypus novemcinctus was not studied using ChIP-Seq data.
Dasypus novemcinctus was not studied using EST data.
Dasypus novemcinctus was not studied using FANTOM5 data.
retro_dnov_1075 was not experimentally validated.