Parental gene:

ZCRB1, ENSCJAG00000017749

Aliases:None
Description:zinc finger CCHC-type and RNA binding motif 1 [Source:HGNC Symbol;Acc:29620]
Organism:Marmoset (Callithrix jacchus)
Coordinates:9:29171456..29186883(+)


>ENSCJAG00000017749
ATGAGTGGTGGATTGGCTCCAAGTAAGAGCACAGTGTATGTATCCAACTTGCCTTTTTCCCTGACAAACAATGACTTGTA
CCGGATATTTTCCAAGTATGGCAAAGTTGTAAAGGTTACCATAATGAAAGATAAAGATACCAGGAAGAGTAAAGGGGTTG
CATTTATTTTATTTTTGGATAAAGACTCTGCACAAAACTGTACCAGGGCAATAAACAACAAACAGTTATTTGGTAGAGTG
ATAAAAGCAAGCATTGCTATTGACAATGGAAGAGCAGCTGAGTTCATCCGAAGGCGAAACTACTTTGATAAATCTAAGTG
TTATGAATGTGGGGAAAGTGGACACTTAAGTTATGCCTGTCCAAAAAATATGCTTGGAGAACGTGAGCCGCCAAAGAAGA
AAGAAAAAAAGAAAAAAAAGAAAGCTCCTGAACCAGAAGAAGAAATTGAGGAAGTAGAAGAAAGTGAAGATGAAGGGGAG
GATCCTGCTCTTGACAGCCTCAGTCAGGCCATAGCATTCCAGCAAGCCAAAATTGAAGAAGAACAAAAAAAATGGAAACC
CAGTTCAGGAGGCCCCTCAACGTCAGATGATTCAAGACGCCCAAGGATAAAGAAAAGCACATATTTCAGTGATGAGGAAG
AACTTAGTGATTAA

Library Parental gene expression (RPM)
SRP051959_colon 5 .66 RPM
SRP051959_heart 12 .40 RPM
SRP051959_kidney 13 .71 RPM
SRP051959_liver 11 .00 RPM
SRP051959_lung 11 .91 RPM
SRP051959_lymph_node 13 .06 RPM
SRP051959_skeletal_muscle 13 .04 RPM
SRP051959_spleen 12 .96 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000019119 ortholog_one2one 2 retrogenes
retro_btau_1637, retro_btau_830,
Choloepus hoffmanni ENSCHOG00000004490 ortholog_one2one 1 retrogene
retro_chof_1549,
Cavia porcellus ENSCPOG00000014554 ortholog_one2one 1 retrogene
retro_cpor_757,
Dasypus novemcinctus ENSDNOG00000010107 ortholog_one2one 11 retrogenes
retro_dnov_1075, retro_dnov_1120, retro_dnov_1127, retro_dnov_1357, retro_dnov_1599, retro_dnov_1673, retro_dnov_1846, retro_dnov_2146, retro_dnov_2432, retro_dnov_2466, retro_dnov_888,
Equus caballus ENSECAG00000012174 ortholog_one2one 1 retrogene
retro_ecab_184,
Erinaceus europaeus ENSEEUG00000000397 ortholog_one2one 1 retrogene
retro_eeur_298,
Echinops telfairi ENSETEG00000019302 ortholog_one2one 1 retrogene
retro_etel_2080,
Gorilla gorilla ENSGGOG00000015647 ortholog_one2one 1 retrogene
retro_ggor_3029,
Loxodonta africana ENSLAFG00000008847 ortholog_one2one 2 retrogenes
retro_lafr_1183, retro_lafr_783,
Microcebus murinus ENSMICG00000017422 ortholog_one2one 3 retrogenes
retro_mmur_1236, retro_mmur_236, retro_mmur_466,
Myotis lucifugus ENSMLUG00000001332 ortholog_one2many 3 retrogenes
retro_mluc_2290, retro_mluc_319, retro_mluc_364,
Monodelphis domestica ENSMODG00000008893 ortholog_one2many 1 retrogene
retro_mdom_114,
Mus musculus ENSMUSG00000022635 ortholog_one2one 1 retrogene
retro_mmus_847,
Oryctolagus cuniculus ENSOCUG00000013664 ortholog_one2many 2 retrogenes
retro_ocun_742, retro_ocun_896,
Otolemur garnettii ENSOGAG00000013178 ortholog_one2many 2 retrogenes
retro_ogar_43, retro_ogar_812,
Ochotona princeps ENSOPRG00000011095 ortholog_one2one 2 retrogenes
retro_opri_729, retro_opri_927,
Procavia capensis ENSPCAG00000011749 ortholog_one2one 2 retrogenes
retro_pcap_458, retro_pcap_64,
Pan troglodytes ENSPTRG00000004838 ortholog_one2one 1 retrogene
retro_ptro_3231,
Pteropus vampyrus ENSPVAG00000006651 ortholog_one2one 2 retrogenes
retro_pvam_1343, retro_pvam_697,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2009 62.43 85.71
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2. retro_cjac_2662 80.91 100.00
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3. retro_cjac_4174 69.12 61.29
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Download FASTA sequences of all ENSCJAG00000017749 retrocopies