RetrogeneDB ID: | retro_cjac_691 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 10:59759045..59759896(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TPM1 | ||
Ensembl ID: | ENSCJAG00000004355 | ||
Aliases: | None | ||
Description: | tropomyosin 1 (alpha) [Source:HGNC Symbol;Acc:12010] |
Percent Identity: | 93.68 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDE-LDKYSEALKDAQE |
MDAIKKKMQMLKLDKENALD.AEQAEADKKAAEDRSKQLE.ELVSLQKKLKGTED..LDKYSEALKDAQE | |
Retrocopy | MDAIKKKMQMLKLDKENALD*AEQAEADKKAAEDRSKQLEYELVSLQKKLKGTEDD<LDKYSEALKDAQE |
Parental | KLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEE |
KLELAEKKATDAEADVASLNR.IQLVEEELD.AQERLA.ALQKLEEAEKAA.ESERGMKVIESRAQKDEE | |
Retrocopy | KLELAEKKATDAEADVASLNRHIQLVEEELDHAQERLAIALQKLEEAEKAAGESERGMKVIESRAQKDEE |
Parental | KMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGQVRQLEEQLRIMDQTLKALMA |
KMEIQEIQLKEAKH.AEDADRKYEEVAR.LVIIE.DLERAEE.A.LSEGQVR.LEEQLRIMDQTLKALMA | |
Retrocopy | KMEIQEIQLKEAKHNAEDADRKYEEVARMLVIIENDLERAEEPAGLSEGQVRRLEEQLRIMDQTLKALMA |
Parental | AEDKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEEKVAHAKEENLSMHQMLDQTLL |
AEDKYSQKEDKYEEEIKVLSDKLKEAETRAEFAE.SVTKL.KSI.DLEEKVAHAKEENLSMHQMLDQTLL | |
Retrocopy | AEDKYSQKEDKYEEEIKVLSDKLKEAETRAEFAEKSVTKLAKSIHDLEEKVAHAKEENLSMHQMLDQTLL |
Parental | ELNNM |
ELN.M | |
Retrocopy | ELNTM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .07 RPM | 180 .61 RPM |
SRP051959_heart | 0 .70 RPM | 820 .43 RPM |
SRP051959_kidney | 0 .02 RPM | 59 .77 RPM |
SRP051959_liver | 0 .00 RPM | 28 .33 RPM |
SRP051959_lung | 0 .05 RPM | 84 .75 RPM |
SRP051959_lymph_node | 0 .05 RPM | 29 .06 RPM |
SRP051959_skeletal_muscle | 2 .45 RPM | 1671 .70 RPM |
SRP051959_spleen | 0 .00 RPM | 64 .71 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000016966 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000012788 | 11 retrocopies | |
Callithrix jacchus | ENSCJAG00000004355 | 2 retrocopies |
retro_cjac_2200, retro_cjac_691 ,
|
Callithrix jacchus | ENSCJAG00000009627 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000009747 | 9 retrocopies | |
Callithrix jacchus | ENSCJAG00000014135 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000014581 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000006534 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000009955 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000003762 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000003277 | 1 retrocopy |