Parental gene:

TPM1, ENSCJAG00000004355

Aliases:None
Description:tropomyosin 1 (alpha) [Source:HGNC Symbol;Acc:12010]
Organism:Marmoset (Callithrix jacchus)
Coordinates:10:5429064..5458631(+)


>ENSCJAG00000004355
ATGGACGCCATCAAGAAGAAGATGCAGATGCTGAAGCTCGACAAGGAGAACGCCTTGGATCGAGCTGAGCAGGCGGAGGC
CGACAAGAAGGCGGCGGAAGACAGGAGCAAGCAGCTCGAGGAGGACATCGCGGCCAAGGAGAAGCTGCTGCGGGTGTCGG
AGGACGAGCGGGACCGGGTGCTGGAGGAGCTGCACAAGGCGGAGGACAGCCTCCTGGCCGCCGAGGAGGCCGCCGCCAAG
CTGGAAGATGAGCTGGTGTCGCTGCAAAAGAAACTCAAGGGCACCGAAGATGAACTGGACAAATATTCTGAGGCTCTCAA
AGATGCCCAGGAGAAGCTGGAGCTGGCAGAGAAAAAGGCCACCGATGCTGAAGCTGACGTAGCTTCTCTGAACAGACGCA
TCCAGCTGGTTGAGGAAGAGTTGGATCGTGCCCAGGAGCGTCTGGCAACAGCTTTGCAGAAGCTGGAGGAAGCTGAGAAG
GCAGCAGATGAGAGTGAGAGAGGCATGAAAGTCATTGAAAGTCGAGCCCAAAAGGATGAAGAGAAAATGGAAATTCAGGA
GATCCAACTGAAAGAGGCCAAGCACATTGCTGAAGATGCCGACCGCAAATATGAAGAGGTGGCCCGTAAGCTTGTCATCA
TTGAGAGCGACCTGGAACGTGCAGAGGAGCGGGCTGAGCTCTCAGAAGGCAAATGTGCCGAGCTTGAAGAAGAATTGAAA
ACTGTGACGAACAACTTGAAGTCACTGGAGGCTCAGGCTGAGAAGTACTCGCAGAAGGAAGACAAATACGAGGAGGAGAT
CAAGGTCCTTTCCGACAAGCTGAAGGAGGCTGAGACTCGGGCTGAGTTTGCGGAGAGGTCAGTAACTAAATTGGAGAAAA
GCATTGATGACTTAGAAGAGAAAGTGGCTCATGCCAAAGAAGAAAACCTTAGTATGCATCAGATGCTGGATCAGACTTTA
CTGGAGTTAAACAACATGTGA

Library Parental gene expression (RPM)
SRP051959_colon 180 .61 RPM
SRP051959_heart 820 .43 RPM
SRP051959_kidney 59 .77 RPM
SRP051959_liver 28 .33 RPM
SRP051959_lung 84 .75 RPM
SRP051959_lymph_node 29 .06 RPM
SRP051959_skeletal_muscle 1671 .70 RPM
SRP051959_spleen 64 .71 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000016966 ortholog_one2one 1 retrogene
retro_cfam_2167,
Choloepus hoffmanni ENSCHOG00000012788 ortholog_one2one 11 retrogenes
retro_chof_1194, retro_chof_1272, retro_chof_1360, retro_chof_1789, retro_chof_1829, retro_chof_2309, retro_chof_346, retro_chof_399, retro_chof_412, retro_chof_770, retro_chof_967,
Callithrix jacchus ENSCJAG00000009627 within_species_paralog 2 retrogenes
retro_cjac_1839, retro_cjac_1894,
Callithrix jacchus ENSCJAG00000009747 within_species_paralog 9 retrogenes
retro_cjac_1232, retro_cjac_1509, retro_cjac_1580, retro_cjac_1910, retro_cjac_2476, retro_cjac_3121, retro_cjac_527, retro_cjac_785, retro_cjac_798,
Callithrix jacchus ENSCJAG00000014135 within_species_paralog 1 retrogene
retro_cjac_206,
Macropus eugenii ENSMEUG00000014581 ortholog_one2one 2 retrogenes
retro_meug_1944, retro_meug_2161,
Pongo abelii ENSPPYG00000006534 ortholog_one2one 1 retrogene
retro_pabe_624,
Ictidomys tridecemlineatus ENSSTOG00000009955 ortholog_one2one 1 retrogene
retro_itri_166,
Tursiops truncatus ENSTTRG00000003762 ortholog_one2one 1 retrogene
retro_ttru_446,
Vicugna pacos ENSVPAG00000003277 ortholog_one2one 1 retrogene
retro_vpac_424,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_691 93.68 100.00
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2. retro_cjac_2200 69.67 99.18
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Download FASTA sequences of all ENSCJAG00000004355 retrocopies