Parental gene:

TPM1, ENSVPAG00000003277

Aliases:None
Description:tropomyosin 1 (alpha) [Source:HGNC Symbol;Acc:12010]
Organism:Alpaca (Vicugna pacos)
Coordinates:GeneScaffold_1682:113285..153799(+)


>ENSVPAG00000003277
GCTGAAGCCGACGTAGCGTCTCTGAACAGACGCATCCAGCTGGTTGAGGAAGAGTTGGATCGTGCCCAGGAGCGTCTGGC
AACAGCCTTGCAGAAGCTGGAGGAGGCCGAGAAGGCAGCAGACGAGAGTGAGAGAGGCATGAAAGTCATTGAAAGCCGAG
CCCAAAAGGATGAGGAGAAAATGGAAATTCAGGAGATCCAGCTGAAAGAGGCCAAGCACATTGCTGAAGATGCCGACCGC
AAGTATGAAGAGGTGGCCCGTAAGCTGGTCATCATTGAGAGTGATCTGGAACGTGCAGAGGAGCGGGCTGAGCTCTCAGA
AGGCAAATGTGCCGAGCTCGAAGAAGAGTTGAAAACTGTGACGAACAACCTGAAGTCACTGGAGGCTCAGGCTGAGAAGT
ACTCGCAGAAGGAAGACAAATACGAGGAGGAGATCAAGGTCCTTTCTGACAAGCTGAAGGAGGCCGAGACTCGGGCCGAG
TTTGCGGAGAGGTCAGTAACTAAGCTGGAGAAAAGCATTGATGACTTAGAAGAGAAAGTGGCTCATGCCAAAGAAGAAAA
CCTTAGTATGCATCAGATGCTGGATCAGACTTTACTGGAGTTAAACAACATGTGA

Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000016966 ortholog_one2one 1 retrogene
retro_cfam_2167,
Choloepus hoffmanni ENSCHOG00000012788 ortholog_one2one 11 retrogenes
retro_chof_1194, retro_chof_1272, retro_chof_1360, retro_chof_1789, retro_chof_1829, retro_chof_2309, retro_chof_346, retro_chof_399, retro_chof_412, retro_chof_770, retro_chof_967,
Callithrix jacchus ENSCJAG00000004355 ortholog_one2one 2 retrogenes
retro_cjac_2200, retro_cjac_691,
Macropus eugenii ENSMEUG00000014581 ortholog_one2one 2 retrogenes
retro_meug_1944, retro_meug_2161,
Pongo abelii ENSPPYG00000006534 ortholog_one2one 1 retrogene
retro_pabe_624,
Rattus norvegicus ENSRNOG00000018184 ortholog_one2one 1 retrogene
retro_rnor_734,
Ictidomys tridecemlineatus ENSSTOG00000009955 ortholog_one2many 1 retrogene
retro_itri_166,
Tursiops truncatus ENSTTRG00000003762 ortholog_one2one 1 retrogene
retro_ttru_446,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_vpac_424 63.84 85.78
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Download FASTA sequences of all ENSVPAG00000003277 retrocopies