Parental gene:

ENSSSCG00000030014

Aliases:None
Description:None
Organism:Pig (Sus scrofa)
Coordinates:5:35681780..35736754(+)


>ENSSSCG00000030014
ATGCGTGAGTATAAGCTAGTCGTTCTTGGCTCAGGAGGCGTTGGAAAATCTGCTCTGACCGTACAATTTGTTCAAGGAAT
TTTTGTTGAAAAATATGATCCTACGATAGAAGATTCTTATAGAAAGCAAGTTGAAGTAGATGCGCAACAGTGTATGCTTG
AAATCTTGGATACTGCAGGAACGGAACAATTTACAGCAATGAGGGACTTGTACATGAAAAATGGACAAGGCTTTGCATTA
GTTTATTCCATCACAGCACAGTCCACATTTAATGATTTACAAGATCTGAGAGAACAGATTCTTCGAGTTAAAGACACTGA
TGATGTTCCAATGATCCTGGTTGGTAATAAGTGTGACTTGGAAGATGAAAGAGTTGTAGGAAAGGAACAAGGTCAAAATC
TAGCAAGACAATGGAACAACTGTGCATTCTTAGAATCCTCTGCAAAATCAAAAATAAATGTTAATGAGATCTTTTATGAC
TTAGTGCGACAAATTAACAGAAAAACTCCAGTGCCTGGGAAGGCCCGCAAAAAGTCATCATGTCAACTGCTTTAA

Library Parental gene expression (RPM)
SRP014902_placenta 23 .76 RPM
SRP014902_testis 17 .40 RPM
SRP018288_heart 10 .84 RPM
SRP018288_kidney 14 .48 RPM
SRP018288_liver 8 .80 RPM
SRP018288_lung 22 .30 RPM
SRP018856_adipose 6 .11 RPM
SRP035408_brain 9 .66 RPM
SRP035408_liver 13 .97 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000008637 ortholog_one2many 1 retrogene
retro_amel_103,
Bos taurus ENSBTAG00000008967 possible_ortholog 3 retrogenes
retro_btau_1564, retro_btau_297, retro_btau_684,
Callithrix jacchus ENSCJAG00000007261 possible_ortholog 3 retrogenes
retro_cjac_1435, retro_cjac_2371, retro_cjac_607,
Cavia porcellus ENSCPOG00000008272 possible_ortholog 4 retrogenes
retro_cpor_1194, retro_cpor_632, retro_cpor_739, retro_cpor_85,
Dasypus novemcinctus ENSDNOG00000019724 ortholog_one2one 18 retrogenes
retro_dnov_1243, retro_dnov_1249, retro_dnov_1323, retro_dnov_1395, retro_dnov_1574, retro_dnov_1710, retro_dnov_1763, retro_dnov_1841, retro_dnov_186, retro_dnov_1976, retro_dnov_2033, retro_dnov_217, retro_dnov_2679, retro_dnov_298, retro_dnov_318, retro_dnov_719, retro_dnov_761, retro_dnov_84,
Dipodomys ordii ENSDORG00000001086 possible_ortholog 1 retrogene
retro_dord_521,
Erinaceus europaeus ENSEEUG00000010052 ortholog_one2one 1 retrogene
retro_eeur_327,
Echinops telfairi ENSETEG00000000242 possible_ortholog 1 retrogene
retro_etel_11,
Homo sapiens ENSG00000127314 possible_ortholog 2 retrogenes
retro_hsap_3338, retro_hsap_4234,
Gorilla gorilla ENSGGOG00000025649 possible_ortholog 1 retrogene
retro_ggor_2836,
Loxodonta africana ENSLAFG00000016460 possible_ortholog 1 retrogene
retro_lafr_482,
Microcebus murinus ENSMICG00000013148 ortholog_one2one 1 retrogene
retro_mmur_116,
Myotis lucifugus ENSMLUG00000016606 possible_ortholog 2 retrogenes
retro_mluc_1126, retro_mluc_2211,
Macaca mulatta ENSMMUG00000011442 ortholog_one2one 2 retrogenes
retro_mmul_1151, retro_mmul_1863,
Monodelphis domestica ENSMODG00000007323 possible_ortholog 5 retrogenes
retro_mdom_11, retro_mdom_1570, retro_mdom_1756, retro_mdom_1897, retro_mdom_429,
Mus musculus ENSMUSG00000052681 possible_ortholog 1 retrogene
retro_mmus_1370,
Nomascus leucogenys ENSNLEG00000003573 possible_ortholog 2 retrogenes
retro_nleu_1034, retro_nleu_481,
Oryctolagus cuniculus ENSOCUG00000029552 ortholog_one2one 5 retrogenes
retro_ocun_1132, retro_ocun_1200, retro_ocun_597, retro_ocun_636, retro_ocun_796,
Otolemur garnettii ENSOGAG00000005746 possible_ortholog 2 retrogenes
retro_ogar_2260, retro_ogar_272,
Procavia capensis ENSPCAG00000010977 possible_ortholog 1 retrogene
retro_pcap_8,
Pongo abelii ENSPPYG00000004751 possible_ortholog 1 retrogene
retro_pabe_3403,
Pan troglodytes ENSPTRG00000005197 ortholog_one2one 3 retrogenes
retro_ptro_1812, retro_ptro_2383, retro_ptro_2877,
Rattus norvegicus ENSRNOG00000007048 ortholog_one2one 4 retrogenes
retro_rnor_2479, retro_rnor_870, retro_rnor_871, retro_rnor_872,
Sarcophilus harrisii ENSSHAG00000011497 possible_ortholog 1 retrogene
retro_shar_425,
Sus scrofa ENSSSCG00000006753 other_paralog 1 retrogene
retro_sscr_520,
Sus scrofa ENSSSCG00000021148 within_species_paralog 1 retrogene
retro_sscr_1125,
Sus scrofa ENSSSCG00000029741 other_paralog 1 retrogene
retro_sscr_634,
Tupaia belangeri ENSTBEG00000013380 possible_ortholog 4 retrogenes
retro_tbel_2145, retro_tbel_4650, retro_tbel_4658, retro_tbel_613,
Tarsius syrichta ENSTSYG00000000192 possible_ortholog 1 retrogene
retro_tsyr_910,
Tursiops truncatus ENSTTRG00000015712 possible_ortholog 2 retrogenes
retro_ttru_1105, retro_ttru_134,
Vicugna pacos ENSVPAG00000000931 possible_ortholog 2 retrogenes
retro_vpac_283, retro_vpac_408,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_435 67.55 79.35
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2. retro_sscr_909 80.72 89.67
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Download FASTA sequences of all ENSSSCG00000030014 retrocopies