Parental gene:

SMEK2, ENSSSCG00000008398

Aliases:None
Description:SMEK homolog 2, suppressor of mek1 (Dictyostelium) [Source:HGNC Symbol;Acc:29267]
Organism:Pig (Sus scrofa)
Coordinates:3:90543635..90592370(-)


>ENSSSCG00000008398
AAACAGGATACATTAATTGTTTGGTCAGAAGCTGAAAACTATGATCTGGCACTAAGTTTTCAGGAAAAGGCTGGCTGTGA
TGAGATCTGGGAAAAAATTTGTCAGGTTCAAGGTAAGGATCCATCAGTGGAAGTCACACAGGACCTCATTGATGAATCAG
AAGAAGAACGATTTGAAGAAATGCCTGAAACCAGTCATATGATTGACTTACCCACATGTGAACTCAATAAACTTGAAGAG
ATTGCTGACTTAGTTACCTCAGTTCTCTCCTCACCTATCCGTAGGGAAAAGCTGGCTCTGGCCTTGGAAAATGAAGGCTA
TATTAAAAAACTACTGCAGCTCTTCCAAGCTTGTGAGAACCTAGAAAACACTGAAGGCTTACACCATTTGTATGAAATTA
TTAGAGGAATCTTATTCCTAAATAAGGCAACTCTGTTTGAGGTAATGTTTTCTGATGAGTGTATCATGGATGTCGTGGGA
TGCCTTGAATATGACCCTGCGTTGGCTCAGCCAAAAAGACACAGAGAATTCTTGACCAAAACTGCAAAGTTTAAGGAAGT
TATACCAATAACAGACTCTGAACTAAGGCAAAAAATACATCAGACTTACAGGGTACAGTACATTCAGGACATCATTTTGC
CTACGCCATCAGTTTTTGAAGAGAATTTTCTTTCTACTCTTACGTCTTTTATTTTTTTCAACAAAGTTGAGATAGTCAGC
ATGTTGCAGGAAGATGAGAAGTTTTTGTCTGAAGTTTTTGCACAATTAACAGATGAGGCCACAGATGATGATAAACGACG
TGAACTGGTTAATTTTTTCAAGGAATTTTGTGCATTTTCTCAGACATTACAACCTCAAAACAGGGATGCATTTTTCAAAA
CTTTGGCAAAGCTGGGAATTCTTCCTGCTCTTGAAATTGTAATGGGCATGGATGATTTGCAAGTCAGATCAGCTGCTACA
GATATATTTTCTTATCTAGTAGAGTTTAGTCCATCCATGGTCCGAGAATTTGTAATGCAAGAAGCCCAGCAGAGTGATGA
TGATATCCTTCTCATTAATGTAGTAATTGAACAAATGATCTGTGATACCGATCCTGAGCTAGGAGGTGCTGTTCAGTTAA
TGGGACTTCTTCGTACTCTAATAGATCCAGAGAATATGCTGGCTACAACTAATAAAACTGAAAAAAGTGAATTTCTAAAT
TTCTTCTACAACCATTGTATGCATGTCCTCACAGCACCACTTTTGACCAATACTTCAGAAGACAGATGTGAAAAGGATAA
TGTAGTTGGATCTAACAAAAACAGCACGGTTTGTCCTGATAATTATCAAACAGCACAGCTGCTTGCCTTAATTTTAGAGC
TACTCACATTTTGTGTGGAACATCACACATATCACATAAAAAACTATATTATGAACAAAGACTTGCTAAGAAGAGTCTTG
GTCTTGATGAATTCAAAGCACACCTTCTTGGCCTTGTGTGCTCTTCGTTTTATGAGGCGGATAATTGGCCTTAAAGATGA
ATTTTATAATCGTTACATCACCAAGGGAAATCTTTTTGAGCCAGTTATAAATGCTCTTCTGGATAATGGAACTCGGTACA
ATCTCTTGAATTCAGCTGTTATTGAGTTATTTGAATTTATAAGAGTGGAAGATATCAAGTCTCTTACTGCACATATAGTT
GAAAACTTTTATAAAGCACTTGAATCGATTGAATATGTTCAGACATTCAAAGGATTGAAGACTAAATATGAGCAAGAAAA
AGACAGACAAAATCAGAAACTGAACAGTGTACCATCTATATTGCGTAGTAACAGATTTCGCAGAGATGCAAAGACCTTGG
AAGAGGATGAAGAAATGTGGTTTAATGAAGATGAAGAGGAGGAAGGAAAACCAGTTGTGGCATCAGTGGAAAAATCTAAA
CCTGAAGATGATTTTCCAGATAGTTACGAAAAATTCATGGAGACGAAAAAAGCAAAAGAAAGTGAAGACAAGGAAAACCT
TCCCAAAAGGACATCTTCTGGTGGCTTCAAATTTACTTTCTCCCACTCCACCAGTGCTGCTAATGGAACAAACAGTACAA
ACAGTAAATCTGTAGTGGCTCAGTCACCACCAGCAAGTTCTAATGGATCCTCTTCCAAAACAACAAACTTAGCTACGACA
GTAACAGCCACCAAGGGAAGTTTGGTTGGTTTAGTGGATTATCCAGATGATGAAGAGGAAGATGAAGAAGAAGAAACATC
TCCCAGGAAAAGACCTCGTCTTGGCTCATAA

Library Parental gene expression (RPM)
SRP014902_placenta 17 .26 RPM
SRP014902_testis 46 .54 RPM
SRP018288_heart 116 .30 RPM
SRP018288_kidney 151 .01 RPM
SRP018288_liver 107 .94 RPM
SRP018288_lung 175 .04 RPM
SRP018856_adipose 51 .07 RPM
SRP035408_brain 156 .45 RPM
SRP035408_liver 88 .54 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000003843 ortholog_one2one 1 retrogene
retro_amel_48,
Bos taurus ENSBTAG00000000545 ortholog_one2one 1 retrogene
retro_btau_232,
Canis familiaris ENSCAFG00000002860 ortholog_one2one 1 retrogene
retro_cfam_226,
Equus caballus ENSECAG00000013819 ortholog_one2one 1 retrogene
retro_ecab_23,
Echinops telfairi ENSETEG00000002420 ortholog_one2one 1 retrogene
retro_etel_1699,
Felis catus ENSFCAG00000026457 ortholog_one2one 1 retrogene
retro_fcat_13,
Homo sapiens ENSG00000138041 ortholog_one2one 1 retrogene
retro_hsap_4799,
Loxodonta africana ENSLAFG00000017825 ortholog_one2one 1 retrogene
retro_lafr_791,
Myotis lucifugus ENSMLUG00000003875 ortholog_one2many 1 retrogene
retro_mluc_994,
Macaca mulatta ENSMMUG00000007001 ortholog_one2one 1 retrogene
retro_mmul_238,
Mustela putorius furo ENSMPUG00000002435 ortholog_one2one 1 retrogene
retro_mputfur_92,
Nomascus leucogenys ENSNLEG00000009338 ortholog_one2one 1 retrogene
retro_nleu_1112,
Oryctolagus cuniculus ENSOCUG00000006880 ortholog_one2one 1 retrogene
retro_ocun_9,
Otolemur garnettii ENSOGAG00000009837 ortholog_one2one 1 retrogene
retro_ogar_140,
Pan troglodytes ENSPTRG00000011933 ortholog_one2one 1 retrogene
retro_ptro_3191,
Ictidomys tridecemlineatus ENSSTOG00000006276 ortholog_one2one 1 retrogene
retro_itri_63,
Tursiops truncatus ENSTTRG00000000027 ortholog_one2one 1 retrogene
retro_ttru_1397,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_1187 73.09 82.94
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Download FASTA sequences of all ENSSSCG00000008398 retrocopies