Parental gene:

SMEK2, ENSFCAG00000026457

Aliases:None
Description:SMEK homolog 2, suppressor of mek1 (Dictyostelium) [Source:HGNC Symbol;Acc:29267]
Organism:Cat (Felis catus)
Coordinates:A3:76529027..76595389(-)


>ENSFCAG00000026457
ATGTCGGATACGCGGCGGCGAGTGAAGGTCTATACCCTCAACGAAGACCGTCAATGGGACGACCGAGGCACCGGGCACGT
CTCCTCTACTTACGTAGAGGAGCTCAAGGGGATGTCGCTGCTGGTTCGGGCTGAGTCCGACGGATCACTACTCTTGGAAT
CAAAGATAAATCCAAACACTGCATATCAAAAACAACAGGATACGTTAATTGTTTGGTCAGAGGCTGAGAACTATGATCTG
GCTCTAAGTTTTCAGGAAAAAGCTGGCTGCGACGAGATTTGGGAAAAAATTTGTCAGGTTCAAGGTAAGGATCCATCAGT
GGAAGTCACACAGGACCTCATTGATGAATCAGAAGAAGAACGATTTGAAGAAATGCCTGAAACCAGTCATCTGATTGACC
TGCCCACATGTGAACTCAATAAACTTGAAGAGATTGCTGACTTAGTTACCTCAGTTCTCTCCTCACCTATCCGTAGGGAA
AAGCTGGCTCTGGCCTTGGAAAACGAAGGCTATATTAAAAAACTACTGCAGCTGTTCCAAGCTTGTGAGAACCTAGAAAA
CACTGAAGGCTTACATCATTTGTATGAAATTATTAGAGGAATCTTATTCCTAAATAAGGCAACATTGTTTGAAGTAATGT
TTTCTGATGAGTGTATCATGGATGTCGTGGGATGCCTTGAATATGACCCTGCTTTGGCTCAGCCAAAAAGGCATAGAGAA
TTCTTGACCAAAACTGCAAAGTTTAAGGAAGTTATACCAATAACAGACTCTGAATTAAGGCAAAAAATACATCAGACTTA
CAGGGTACAGTACATTCAGGACATCATTTTGCCTACACCATCCGTTTTTGAAGAGAATTTTCTTTCTACTCTTACATCTT
TTATTTTCTTCAACAAAGTTGAGATAGTCAGCATGTTGCAGGAAGATGAGAAGTTTCTGTCGGAAGTTTTTGCACAATTA
ACGGATGAGGCTACAGATGATGATAAACGGCGTGAATTGGTTAATTTTTTCAAGGAATTTTGTGCATTTTCTCAGACATT
ACAACCTCAAAACAGGGATGCATTTTTCAAAACTTTGGCAAAATTGGGGATTCTGCCTGCTCTTGAAATTGTAATGGGCA
TGGATGATTTGCAAGTTAGATCAGCAGCTACAGATATATTTTCTTATCTAGTAGAGTTTAGTCCATCTATGGTCCGAGAA
TTTGTAATGCAAGAAGCCCAGCAGAGTGATGATGATATCCTTCTCATTAATGTAGTAATTGAACAAATGATCTGTGATAC
TGATCCTGAGCTAGGAGGTGCTGTTCAGTTAATGGGACTTCTTCGTACTCTAATTGATCCAGAGAACATGCTGGCTACAA
CTAATAAAACTGAAAAAAGTGAATTTCTAAATTTCTTCTACAACCATTGTATGCATGTTCTCACAGCACCACTTTTGACC
AATACTTCAGAAGATAAGTGTGAAAAGGATAATATAGTTGGATCTAACAAGAACAGCACGATTTGCCCTGATAATTATCA
AACAGCACAGCTGCTTGCCTTAATTTTAGAACTACTCACATTTTGCGTGGAACATCACACATACCACATAAAAAACTATA
TTATGAACAAGGACTTGCTAAGAAGAGTCTTGGTCTTGATGAATTCAAAGCACACTTTCCTGGCCTTGTGTGCTCTTCGT
TTTATGAGGCGGATAATTGGCCTTAAAGATGAATTTTATAATCGTTACATCACGAAGGGAAATCTTTTTGAGCCAGTTAT
AAATGCTCTCCTGGATAACGGAACTCGGTACAATCTGTTGAATTCAGCTGTCATTGAGTTATTTGAATTTATAAGAGTGG
AAGATATCAAGTCTCTTACTGCACATATAGTTGAAAACTTTTATAAAGCACTTGAATCAATTGAATATGTTCAGACATTC
AAAGGATTGAAGACTAAATATGAGCAAGAAAAAGACAGACAAAATCAGAAACTGAACAGTGTACCATCTATATTGCGTAG
TAACAGATTTCGCAGAGATGCAAAAGCCTTGGAAGAGGATGAAGAAATGTGGTTTAATGAAGATGAAGAGGAGGAAGGAA
AAGCAGTTGTGGCACCAGTAGAAAAATCTAAGCCAGAAGATGATTTTCCAGATACTTATGAAAAATTTATGGAGACCAAA
AAAGCAAAAGAAAGTGAAGACAAAGAAAACCTTCCCAAAAGGACATCATCTAGTGGCTTCAAATTTACTTTCTCCCACTC
TGCCAGTGCTGCTAATGGAACAAACAGTACAAACAGTAAATCTGTAGTGGCTCAGACACCACCAGCAAGTTCTAATGGAT
CCTCTTCCAAAACTACAAACTTGGCCACATCAGTAACAGCCACCAAGGGCAGTTTGGTTGGGTTAGTGGATTATCCAGAT
GATGAAGAGGAAGATGAAGAAGAAGAAACATCTCCCAGGAAAAGACCTCGTCTTGGCTCATAA

Library Parental gene expression (RPM)
SRP017611_brain 94 .00 RPM
SRP017611_kidney 126 .35 RPM
SRP017611_liver 86 .03 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000003843 ortholog_one2one 1 retrogene
retro_amel_48,
Bos taurus ENSBTAG00000000545 ortholog_one2one 1 retrogene
retro_btau_232,
Canis familiaris ENSCAFG00000002860 ortholog_one2one 1 retrogene
retro_cfam_226,
Equus caballus ENSECAG00000013819 ortholog_one2one 1 retrogene
retro_ecab_23,
Echinops telfairi ENSETEG00000002420 ortholog_one2many 1 retrogene
retro_etel_1699,
Homo sapiens ENSG00000138041 ortholog_one2one 1 retrogene
retro_hsap_4799,
Loxodonta africana ENSLAFG00000017825 ortholog_one2many 1 retrogene
retro_lafr_791,
Myotis lucifugus ENSMLUG00000003875 ortholog_one2many 1 retrogene
retro_mluc_994,
Macaca mulatta ENSMMUG00000007001 ortholog_one2one 1 retrogene
retro_mmul_238,
Mustela putorius furo ENSMPUG00000002435 ortholog_one2one 1 retrogene
retro_mputfur_92,
Nomascus leucogenys ENSNLEG00000009338 ortholog_one2one 1 retrogene
retro_nleu_1112,
Oryctolagus cuniculus ENSOCUG00000006880 ortholog_one2one 1 retrogene
retro_ocun_9,
Otolemur garnettii ENSOGAG00000009837 ortholog_one2one 1 retrogene
retro_ogar_140,
Pan troglodytes ENSPTRG00000011933 ortholog_one2one 1 retrogene
retro_ptro_3191,
Sus scrofa ENSSSCG00000008398 ortholog_one2one 1 retrogene
retro_sscr_1187,
Ictidomys tridecemlineatus ENSSTOG00000006276 ortholog_one2one 1 retrogene
retro_itri_63,
Tursiops truncatus ENSTTRG00000000027 ortholog_one2one 1 retrogene
retro_ttru_1397,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_fcat_13 68.14 85.37
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Download FASTA sequences of all ENSFCAG00000026457 retrocopies