Parental gene:

SMEK2, ENSCAFG00000002860

Aliases:None
Description:SMEK homolog 2, suppressor of mek1 (Dictyostelium) [Source:HGNC Symbol;Acc:29267]
Organism:Dog (Canis familiaris)
Coordinates:10:56406746..56467756(-)


>ENSCAFG00000002860
ATGTCGGATACGCGGCGGCGAGTGAAGGTCTATACCCTCAACGAAGACCGTCAGTGGGACGACCGAGGCACCGGGCATGT
CTCCTCCACTTATGTGGAGGAGCTCAAGGGGATGTCGCTGCTGGTTCGGGCTGAGTCCGACGGATCACTACTCTTGGAGT
CAAAGATAAATCCAAACACTGCATATCAGAAACAACAGGATACATTAATTGTTTGGTCGGAAGCTGAGAACTATGATCTG
GCTCTGAGTTTTCAGGAAAAAGCTGGCTGCGATGAGATCTGGGAAAAAATTTGTCAGGTTCAAGGTAAGGATCCATCTGT
GGAAGTCACACAGGACCTCATTGATGAATCAGAAGAAGAACGATTTGAAGAAATACCTGAAACCAGTCATCTGATTGACC
TACCCACATGTGAACTCAATAAACTTGAAGAGATTGCTGACTTAGTTACCTCAGTTCTCTCCTCACCTATCCGTAGGGAA
AAGCTGGCTCTGGCCTTGGAAAATGAAGGCTATATTAAAAAACTACTGCAGCTGTTCCAAGCTTGTGAGAATCTAGAAAA
CACTGAAGGCTTACACCATTTGTATGAAATTATTAGAGGAATATTATTCCTAAATAAGGCAACTTTGTTTGAAGTAATGT
TTTCTGATGAGTGTATCATGGATGTTGTGGGATGCCTTGAATATGACCCTGCTTTGGCTCAGCCAAAAAGGCATAGAGAA
TTTTTGACCAAAACTGCAAAGTTTAAGGAAGTTATACCAATAACAGACTCTGAACTAAGGCAAAAAATACATCAGACTTA
CAGGGTACAGTACATTCAGGACATCATTTTGCCTACGCCATCTGTTTTTGAAGAGAATTTTCTTTCCACTCTAACGTCTT
TTATTTTCTTCAACAAAGTGGAGATAGTCAGCATGTTGCAGGAAGATGAGAAGTTTTTGTCTGAAGTTTTTGCACAATTA
ACGGATGAGGCTACAGATGATGATAAACGGCGTGAATTGGTTAATTTTTTCAAGGAATTTTGTGCATTTTCTCAGACATT
GCAGCCTCAAAACAGGGATGCATTTTTCAAAACTTTGGCAAAGTTGGGAATTCTTCCTGCCCTTGAAATTGTAATGGGCA
TGGATGATTTGCAAGTCAGATCAGCAGCTACAGATATATTTTCTTATCTAGTAGAGTTTAGTCCATCCATGGTCCGAGAA
TTTGTAATGCAAGAAGCCCAGCAGAGTGATGATGATATCCTTCTCATTAATGTAGTAATTGAGCAAATGATCTGTGATAC
TGATCCTGAGCTAGGAGGTGCTGTTCAGTTAATGGGACTGCTTCGTACTCTAATTGATCCAGAAAACATGCTGGCTACAA
CTAATAAAACTGAAAAAAGTGAATTTCTAAATTTCTTCTACAACCATTGTATGCATGTTCTCACAGCACCACTTTTGACC
AATACTTCAGAAGACAAGTGTGAAAAGGATAATATAGTTGGATCTAACAAAAACAGCACGATTTGCCCTGATAATTATCA
AACAGCACAGCTGCTTGCCTTAATTTTAGAACTACTCACATTTTGTGTGGAACATCACACATATCACATAAAAAACTATA
TTATGAACAAGGACTTGCTAAGAAGAGTCTTGGTCTTGATGAATTCAAAGCACACTTTCCTGGCCTTGTGTGCTCTTCGT
TTTATGAGGCGGATAATTGGCCTTAAAGATGAATTTTATAATCGTTACATCACAAAGGGAAATCTTTTTGAGCCAGTTAT
AAATGCTCTTCTGGATAATGGAACTCGGTACAATCTGTTGAATTCAGCTGTTATTGAGTTATTTGAATTTATAAGAGTGG
AAGATATCAAGTCTCTTACTGCACATATAGTTGAAAACTTTTATAAAGCACTTGAATCAATTGAATATGTTCAGACATTC
AAAGGATTGAAGACTAAATATGAGCAAGAAAAAGACAGACAAAATCAAAAACTGAACAGTGTACCATCTATATTACGTAG
TAACAGATTTCGCAGAGATGCAAAAGCCTTGGAAGAGGATGAAGAAATGTGGTTTAATGAAGATGAAGAGGAGGAAGGAA
AAGCAGTTGTGGCACCAGTAGAAAAATCTAAGCCAGAAGATGATTTTCCAGATACTTACGAAAAATTTATGGAGACAAAA
AAAGCAAAAGAAAGTGAAGACAAGGAAAACCTTCCTAAAAGGACATCATCTAGTGGCTTCAAATTTACATTCTCCCACTC
TGCCAGTACTGCTAATGGAACAAATAGTACAAACAGTAAGTCTGTAGTGGCTCAGACACCACCAGCAAGTTCTAATGGAT
CCTCCTCCAAAACTACAAACTTGGCTACATCAGTAACAGCCACCAAGGGAAGTTTGGTTGGTTTAGTGGATTATCCAGAT
GATGAAGAGGAAGATGAAGAAGAAGAAACATCTCCCAGGAAAAGACCTCGTCTTGGCTCATAA

Library Parental gene expression (RPM)
SRP012049_cerebellum 84 .50 RPM
SRP017611_brain 58 .91 RPM
SRP017611_kidney 85 .06 RPM
SRP017611_liver 40 .32 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000003843 ortholog_one2one 1 retrogene
retro_amel_48,
Bos taurus ENSBTAG00000000545 ortholog_one2one 1 retrogene
retro_btau_232,
Equus caballus ENSECAG00000013819 ortholog_one2one 1 retrogene
retro_ecab_23,
Echinops telfairi ENSETEG00000002420 ortholog_one2many 1 retrogene
retro_etel_1699,
Felis catus ENSFCAG00000026457 ortholog_one2one 1 retrogene
retro_fcat_13,
Homo sapiens ENSG00000138041 ortholog_one2one 1 retrogene
retro_hsap_4799,
Loxodonta africana ENSLAFG00000017825 ortholog_one2many 1 retrogene
retro_lafr_791,
Myotis lucifugus ENSMLUG00000003875 ortholog_one2many 1 retrogene
retro_mluc_994,
Macaca mulatta ENSMMUG00000007001 ortholog_one2one 1 retrogene
retro_mmul_238,
Mustela putorius furo ENSMPUG00000002435 ortholog_one2one 1 retrogene
retro_mputfur_92,
Nomascus leucogenys ENSNLEG00000009338 ortholog_one2one 1 retrogene
retro_nleu_1112,
Oryctolagus cuniculus ENSOCUG00000006880 ortholog_one2one 1 retrogene
retro_ocun_9,
Otolemur garnettii ENSOGAG00000009837 ortholog_one2one 1 retrogene
retro_ogar_140,
Pan troglodytes ENSPTRG00000011933 ortholog_one2one 1 retrogene
retro_ptro_3191,
Sus scrofa ENSSSCG00000008398 ortholog_one2one 1 retrogene
retro_sscr_1187,
Ictidomys tridecemlineatus ENSSTOG00000006276 ortholog_one2one 1 retrogene
retro_itri_63,
Tursiops truncatus ENSTTRG00000000027 ortholog_one2one 1 retrogene
retro_ttru_1397,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_226 70.19 85.49
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSCAFG00000002860 retrocopies