Parental gene:

TRAM1, ENSSSCG00000006193

Aliases:None
Description:translocation associated membrane protein 1 [Source:HGNC Symbol;Acc:20568]
Organism:Pig (Sus scrofa)
Coordinates:4:70399154..70429614(+)


>ENSSSCG00000006193
ATGGCGATTCGCAAGAAGAGCACCAAGAGCCCCCCGGTCCTGAGCCACGAATTCGTCCTGCAGAATCACGCGGACATCGT
CTCCTGTATGGCGATGGTTTTCCTGCTGGGGCTCATGTTCGAGATAACAGCGAAAGCCTCTATAATTTTTGTTACTCTTC
AGTACAATGTTACCCTCCCTGCAACAGAAGAACAAGCTACTGAATCAGCGTTCCTTTATTACTATGGTATCAAAGATTTG
GCTACCGTTTTCTTCTACATGCTAGTGGCGATAATTATTCATGCCATAATTCAAGAGTATGTGTTGGATAAAATTAACAG
GCGAATGCACTTCTCCAAAACGAAACACAGCAAGTTTAATGAATCTGGTCAGCTTAGTGCATTCTACCTGTTTTCTTGTA
TTTGGGGCACATTCATTCTAATATCTGAAAACTACATTTCAGACCCAACTATCCTGTGGAGGGCCTATCCCCATAATCTG
ATGACATTTCAAATGAAGTTTTTCTACATATCACAGTTGGCATACTGGTTTCATGCTTTTCCTGAACTCTACTTCCAGAA
AACCAAAAAAGAAGATATTCCTCGTCAGCTCGTCTACATTGGCCTTTACCTCTTTCACATTGCCGGAGCTTATCTTTTGA
ACTTGAATCATCTAGGACTTGTTCTTTTGGTGCTGCACTATTTTGTTGAGTTTCTTTTCCATATTTCTCGCCTGTTTTAT
TTTAGTGATGAAAAGTATCAGAAAGGATTTTCTCTGTGGGCAGTTCTGTTTGTTTTGGGAAGACTTCTGACTTTAATTCT
TTCGGTACTCACTGTTGGCTTTGGCCTTGCAAGAGCAGAGAATCAGAAGCTGGATTTCAGTACTGGAAACTTCAATGTGT
TGGCTGTTAGAATTGCCGTTCTGGCATCCATTTGCATTACCCAGGCGTTCATGATGTGGAAGTTCATTAATTTTCAGCTT
CGGAGGTGGAGAGAACATTCTACTTTTCAGGCACCAACTGTGAAGAAGAAACCAATAGTGACGAAAGGCAGATCTTCTAG
AAAAGGAACAGAAAATGGTGTGAATGGAACAGTAACTTCAAATGGAGCGGACTCTCCCCGTAATAGAAAAGAGAAATCTT
CATAA

Library Parental gene expression (RPM)
SRP014902_placenta 30 .40 RPM
SRP014902_testis 73 .55 RPM
SRP018288_heart 61 .29 RPM
SRP018288_kidney 99 .39 RPM
SRP018288_liver 136 .56 RPM
SRP018288_lung 251 .82 RPM
SRP018856_adipose 43 .93 RPM
SRP035408_brain 9 .02 RPM
SRP035408_liver 121 .71 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000006325 ortholog_one2one 1 retrogene
retro_amel_78,
Bos taurus ENSBTAG00000007562 ortholog_one2one 1 retrogene
retro_btau_24,
Canis familiaris ENSCAFG00000007866 ortholog_one2one 1 retrogene
retro_cfam_15,
Callithrix jacchus ENSCJAG00000007893 ortholog_one2one 1 retrogene
retro_cjac_168,
Dasypus novemcinctus ENSDNOG00000009296 ortholog_one2one 2 retrogenes
retro_dnov_27, retro_dnov_906,
Dipodomys ordii ENSDORG00000001901 ortholog_one2one 1 retrogene
retro_dord_27,
Equus caballus ENSECAG00000018378 ortholog_one2one 1 retrogene
retro_ecab_506,
Echinops telfairi ENSETEG00000018447 ortholog_one2one 1 retrogene
retro_etel_674,
Felis catus ENSFCAG00000028775 ortholog_one2one 1 retrogene
retro_fcat_136,
Homo sapiens ENSG00000067167 ortholog_one2one 1 retrogene
retro_hsap_51,
Loxodonta africana ENSLAFG00000011625 ortholog_one2one 1 retrogene
retro_lafr_9,
Macaca mulatta ENSMMUG00000001516 ortholog_one2one 1 retrogene
retro_mmul_235,
Mustela putorius furo ENSMPUG00000010616 ortholog_one2one 1 retrogene
retro_mputfur_558,
Mus musculus ENSMUSG00000025935 ortholog_one2one 1 retrogene
retro_mmus_117,
Nomascus leucogenys ENSNLEG00000011376 ortholog_one2one 1 retrogene
retro_nleu_73,
Oryctolagus cuniculus ENSOCUG00000008734 ortholog_one2one 1 retrogene
retro_ocun_52,
Otolemur garnettii ENSOGAG00000006379 ortholog_one2one 1 retrogene
retro_ogar_2932,
Pongo abelii ENSPPYG00000018660 ortholog_one2one 1 retrogene
retro_pabe_169,
Pan troglodytes ENSPTRG00000020334 ortholog_one2one 1 retrogene
retro_ptro_2081,
Rattus norvegicus ENSRNOG00000007892 ortholog_one2one 1 retrogene
retro_rnor_287,
Ictidomys tridecemlineatus ENSSTOG00000005537 ortholog_one2one 1 retrogene
retro_itri_38,
Tarsius syrichta ENSTSYG00000013887 ortholog_one2one 1 retrogene
retro_tsyr_24,
Tursiops truncatus ENSTTRG00000000328 ortholog_one2one 1 retrogene
retro_ttru_24,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_980 67.82 100.00
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Download FASTA sequences of all ENSSSCG00000006193 retrocopies