Parental gene:

MMU.4318, ENSMMUG00000001516

Aliases:None
Description:translocating chain-associated membrane protein 1 [Source:RefSeq peptide;Acc:NP_001253304]
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:8:73163587..73196419(-)


>ENSMMUG00000001516
ATGGCGATTCGCAAGAAGAGCACCAAGAGCCCCCCGGTGCTGAGCCACGAATTCGTCCTGCAGAATCACGCGGACATCGT
CTCCTGTGTGGCGATGGTCTTCCTGCTGGGGCTCATGTTTGAGATAACGGCAAAAGCTTCTATCATTTTCGTTACTCTTC
AGTACAATGTCACCCTCCCCGCAACAGAAGAACAAGCTACTGAATCAGCGTCCCTTTATTACTATGGTATCAAAGATTTG
GCTACAGTTTTCTTCTACATGCTAGTGGCAATAATTATTCATGCTGTTATTCAAGAGTATATGTTGGATAAAATTAACAG
GCGAATGCACTTCTCCAAAACGAAACACAGCAAGTTTAATGAATCTGGTCAGCTTAGTGCATTCTACCTTTTTGCCTGTG
TTTGGGGCACATTCATTCTAATCTCTGAAAACTACATCTCAGACCCAACTATCTTATGGAGGGCTTATCCCCATAACCTG
ATGACGTTTCAAATGAAGTTTTTCTACATATCACAGCTGGCTTACTGGCTTCATGCTTTTCCTGAACTCTACTTCCAGAA
AACCAAAAAAGAGGATATTCCTCGTCAGCTTGTCTACATTGGTCTTTACCTCTTCCACATTGCTGGAGCTTACCTTTTGA
ACTTGAATCATCTAGGACTTGTTCTTCTGGTGCTACATTATTTTGTTGAATTTCTTTTCCACATTTCTCGCCTGTTTTAT
TTTAGCAATGAAAAGTATCAGAAAGGATTTTCTCTGTGGGCAGTTCTTTTTGTTTTTGGAAGACTTCTGACTTTAATTCT
TTCAGTACTGACTGTTGGTTTTGGCCTTGCAAGAGCAGAGAATCAGAAGCTGGATTTCAGTACTGGAAACTTCAATGTGT
TGGCTGTTAGAATTGCTGTTCTGGCATCCATTTGCATTACTCAAGCATTCATGATGTGGAAGTTCATTAATTTTCAGCTT
CGGAGGTGGAGGGAACATTCTGCTTTTCAGGCACCAGCTGTGAAGAAGAAACCAACAGTAACTAAAGGCAGATCTTCTAA
AAAAGGAACAGAAAATGGTGTAAATGGAACATTAACTTCAAATGTAGCAGACTCTCCCCGGAATAGAAAAGAAAAATCTT
CATAA

Library Parental gene expression (RPM)
SRP007412_brain 25 .44 RPM
SRP007412_brain_prefrontal_cortex 15 .71 RPM
SRP007412_cerebellum 24 .60 RPM
SRP007412_heart 46 .40 RPM
SRP007412_kidney 58 .45 RPM
SRP007412_liver 72 .72 RPM
SRP007412_testis 157 .56 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000006325 ortholog_one2one 1 retrogene
retro_amel_78,
Bos taurus ENSBTAG00000007562 ortholog_one2one 1 retrogene
retro_btau_24,
Canis familiaris ENSCAFG00000007866 ortholog_one2one 1 retrogene
retro_cfam_15,
Callithrix jacchus ENSCJAG00000007893 ortholog_one2one 1 retrogene
retro_cjac_168,
Dasypus novemcinctus ENSDNOG00000009296 ortholog_one2one 2 retrogenes
retro_dnov_27, retro_dnov_906,
Dipodomys ordii ENSDORG00000001901 ortholog_one2one 1 retrogene
retro_dord_27,
Equus caballus ENSECAG00000018378 ortholog_one2one 1 retrogene
retro_ecab_506,
Echinops telfairi ENSETEG00000018447 ortholog_one2one 1 retrogene
retro_etel_674,
Felis catus ENSFCAG00000028775 ortholog_one2one 1 retrogene
retro_fcat_136,
Homo sapiens ENSG00000067167 ortholog_one2one 1 retrogene
retro_hsap_51,
Loxodonta africana ENSLAFG00000011625 ortholog_one2one 1 retrogene
retro_lafr_9,
Monodelphis domestica ENSMODG00000007316 possible_ortholog 1 retrogene
retro_mdom_308,
Mustela putorius furo ENSMPUG00000010616 ortholog_one2one 1 retrogene
retro_mputfur_558,
Mus musculus ENSMUSG00000025935 ortholog_one2one 1 retrogene
retro_mmus_117,
Nomascus leucogenys ENSNLEG00000011376 ortholog_one2one 1 retrogene
retro_nleu_73,
Oryctolagus cuniculus ENSOCUG00000008734 ortholog_one2one 1 retrogene
retro_ocun_52,
Otolemur garnettii ENSOGAG00000006379 ortholog_one2one 1 retrogene
retro_ogar_2932,
Pongo abelii ENSPPYG00000018660 ortholog_one2one 1 retrogene
retro_pabe_169,
Pan troglodytes ENSPTRG00000020334 ortholog_one2one 1 retrogene
retro_ptro_2081,
Rattus norvegicus ENSRNOG00000007892 ortholog_one2one 1 retrogene
retro_rnor_287,
Sus scrofa ENSSSCG00000006193 ortholog_one2one 1 retrogene
retro_sscr_980,
Ictidomys tridecemlineatus ENSSTOG00000005537 ortholog_one2one 1 retrogene
retro_itri_38,
Tarsius syrichta ENSTSYG00000013887 ortholog_one2one 1 retrogene
retro_tsyr_24,
Tursiops truncatus ENSTTRG00000000328 ortholog_one2one 1 retrogene
retro_ttru_24,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_235 70.05 100.00
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSMMUG00000001516 retrocopies