Parental gene:

TRAM1, ENSDNOG00000009296

Aliases:None
Description:translocation associated membrane protein 1 [Source:HGNC Symbol;Acc:20568]
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:GeneScaffold_7427:16476..42444(-)


>ENSDNOG00000009296
ATGGCGATTCGCAAGAAGAGCACCAAGAGCTCTCTGGTCCTGAGCCACGAATTCATCCTGCAGAATCACGCGGACATCGT
CTCCTGTGTGGCGATGGTCTTCCTGCTGGGGCTTATGTTCGAGATAACAGCAAAAGCATCTATCATTTTTGTTACTCTTC
AGTACAATGTTACTCTGCCAGCAACAGAAGAACAAGCTACTGAAGCAGCGTCCCTTTATTACTATGGTATCAAAGACTTG
GCTACGGTTTTCTTCTACATGCTAGTGGCAATAATTATTCATGCCATAATTCAAGAATATGTGTTGGATAAAATTAACAG
GCGAATGCACTTCTCCAAAACGAAACACAGCAAGTTTAATGAATCTGGTCAGCTTAGTGCTTTCTACCTTTTTTCTTGTA
TTTGGGGCACATTCATTCTGTTCTCTGAAAACTACATCTCAGACCCTACTATCTTGTGGCGGGCTTATCCCCATACCCTG
ATGACNNNNNNNNNNNNNTTTTTCTACATATCACAGTTGGCTTACTGGTTTCATGCTTTTCCTGAACTCTACTTCCAGAA
AACCAAAAAAGAAGATATTCCACGTCAACTTGTCTACATTGGTCTTTACCTCTTTCACATTGCTGGAGCTTATCTTTTGA
ATTTGAATCATCTTGGACTTGTTCTTTTGGTGCTTCATTATTTTGTCGAATTTCTTTTCCACATTTCCCGCCTGTTTTAT
TTTAGTGATGAAAAATATCAGGGGTTTTCTCTGTGGGCAGTTTTGTTTGTTTTGGGAAGACTTCTGACTTTAATTCTTTC
AGTACTCACTGTTGGCTTTGGCCTTGCAAGAGCAGAGAATCAGAAGCTGGATTTCAGTACTGGAAACTTCAATGTGTTGG
CGGTTAGAATTGCTGTCTTGGCATCCATTTGCATTACTCAAGCATTCATGATGTGGAAGTTCATTAATTTCCAGCTTCGG
AGATGGAGGGAACATTCTAGTTTTCAGGCACCAACTGTGAAGAAGAAACCAACAGTGACTAAAGGCAGATCTTCTAGAAA
AGGAACA

Library Parental gene expression (RPM)
SRP012922_ascending_colon 96 .26 RPM
SRP012922_cerebellum 11 .68 RPM
SRP012922_heart 13 .92 RPM
SRP012922_kidney 41 .62 RPM
SRP012922_liver 76 .47 RPM
SRP012922_lung 69 .18 RPM
SRP012922_quadricep_muscle 15 .58 RPM
SRP012922_spleen 135 .52 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000006325 ortholog_one2one 1 retrogene
retro_amel_78,
Bos taurus ENSBTAG00000007562 ortholog_one2one 1 retrogene
retro_btau_24,
Canis familiaris ENSCAFG00000007866 ortholog_one2one 1 retrogene
retro_cfam_15,
Callithrix jacchus ENSCJAG00000007893 ortholog_one2one 1 retrogene
retro_cjac_168,
Dipodomys ordii ENSDORG00000001901 ortholog_one2one 1 retrogene
retro_dord_27,
Equus caballus ENSECAG00000018378 ortholog_one2one 1 retrogene
retro_ecab_506,
Echinops telfairi ENSETEG00000018447 ortholog_one2one 1 retrogene
retro_etel_674,
Felis catus ENSFCAG00000028775 ortholog_one2one 1 retrogene
retro_fcat_136,
Homo sapiens ENSG00000067167 ortholog_one2one 1 retrogene
retro_hsap_51,
Loxodonta africana ENSLAFG00000011625 ortholog_one2one 1 retrogene
retro_lafr_9,
Macaca mulatta ENSMMUG00000001516 ortholog_one2one 1 retrogene
retro_mmul_235,
Monodelphis domestica ENSMODG00000007316 possible_ortholog 1 retrogene
retro_mdom_308,
Mustela putorius furo ENSMPUG00000010616 ortholog_one2one 1 retrogene
retro_mputfur_558,
Mus musculus ENSMUSG00000025935 ortholog_one2one 1 retrogene
retro_mmus_117,
Nomascus leucogenys ENSNLEG00000011376 ortholog_one2one 1 retrogene
retro_nleu_73,
Oryctolagus cuniculus ENSOCUG00000008734 ortholog_one2one 1 retrogene
retro_ocun_52,
Otolemur garnettii ENSOGAG00000006379 ortholog_one2one 1 retrogene
retro_ogar_2932,
Pongo abelii ENSPPYG00000018660 ortholog_one2one 1 retrogene
retro_pabe_169,
Pan troglodytes ENSPTRG00000020334 ortholog_one2one 1 retrogene
retro_ptro_2081,
Rattus norvegicus ENSRNOG00000007892 ortholog_one2one 1 retrogene
retro_rnor_287,
Sus scrofa ENSSSCG00000006193 ortholog_one2one 1 retrogene
retro_sscr_980,
Ictidomys tridecemlineatus ENSSTOG00000005537 ortholog_one2one 1 retrogene
retro_itri_38,
Tarsius syrichta ENSTSYG00000013887 ortholog_one2one 1 retrogene
retro_tsyr_24,
Tursiops truncatus ENSTTRG00000000328 ortholog_one2one 1 retrogene
retro_ttru_24,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_27 73.64 99.71
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2. retro_dnov_906 77.30 52.44
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Download FASTA sequences of all ENSDNOG00000009296 retrocopies