Parental gene:

GALNT12, ENSSSCG00000005379

Aliases:None
Description:UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 12 (GalNAc-T12) [Source:HGNC Symbol;Acc:19877]
Organism:Pig (Sus scrofa)
Coordinates:1:268840562..268881630(+)


>ENSSSCG00000005379
ATGTGGGGGCGCGCGGCATGGAGGCGCTGCCCGCGAGGGCTGCGGCGCGGCCGGGAGGCGCTGCTGGCGCTGTTGATGCT
GTTGGCGCTGGCCGCACTAGGCTCGGTGCTGCGGGCGCGGAGCGGGGCCGGAGCGCCCGAGCCAGGACCCCAGCGCAGTC
GGCGCTCGGGGCGGCGCGACCCTGTCCTGCCGCGGCCGCCGGTGTCCGAGGACTCTCTGGGCGCGCATGGTGAGGCGGTG
TGGCTGCAGCTGCAGGGCGAGGAACTGCGGCTGCAGGAGGAGAGCCTACGGCTGCACCAGATCAACATCTACCTCAGCGA
CCGCATCTCGCTGCACCGTCGCCTGCCAGAGCGCTGGAACCCGCTGTGCAAAGAGAAGAAATACGATTATGACCATTTGC
CCACAACATCGGTCGTCATTGCATTTTATAATGAAGCCTGGTCAACACTCCTTCGGACGGTTTACAGTGTCCTTGAGACG
TCCCCTGACATCCTGCTGGAAGAAGTTATCCTTGTAGATGACTACAGCGATCGAGAGCACCTGAAGGAGCGCCTGGCTAT
TGAGCTTGCCAAGCTGCCCAAGGTCCGCCTGATCCGCGCCAACAAGAGGGAGGGCCTGGTGCGAGCACGGCTGCTGGGGG
CTTCCGTGGCCAAGGGTGATGTGCTGACCTTCCTGGACTGCCACTGCGAGTGCCACGAGGGCTGGCTGGAGCCGCTGCTG
CAGAGGATTCACGAAAAAGAGTCGGCAGTGGTGTGCCCTGTGATTGACGTGATTGACTGGAATACCTTCGAGTACATGGG
GAACTCCAGGGAGCCCCAGATCGGCGGGTTTGACTGGAGGCTCGTGTTCACATGGCACGTGGTTCCCGAGAGGGAGAGGC
TCCGCATGAAGTCCCCCATCGATGTCATCAGGTCTCCAACCATGGCTGGTGGGCTGTTTGCCGTGAGTAAGAAATATTTT
GAATACCTGGGGGCTTATGATACAGGAATGGAAGTTTGGGGAGGAGAGAACCTCGAGTTTTCCTTTAGGATCTGGCAATG
CGGGGGGACCCTGGAGATACACCCGTGTTCCCATGTTGGCCATGTTTTCCCCAAGCAAGCTCCTTACTCCCGTAGCAAAG
CTCTGGCCAACAGTGTCCGCGCAGCCGAAGTATGGATGGATGAATTTAAAGAGCTCTACTACCATCGCAATCCCCATGCC
CGCTTGGAACCCTTTGGGGACGTGACAGAGAGGAAGCAGCTCCGTGCAAAGCTCCAGTGTAAGGACTTCAAGTGGTTCTT
GGAGACCGTGTATCCAGAACTGCACGTGCCTGAGGACAGGCCTGGCTTCTTCGGGATGGTTTTATCCAGAGGGTTGTATT
TTTATTTGTTGGCTCATTTAAAGGACGTGTACTCAAACGTACCATACTCGAAAGTCATTCAAAATCATTCTTTTATCTAT
GTCTGTCACCAACTTGATACATCAAAATTTTTCGAGTACACGTCCCGGAATGAAATCCGCTATAACACCCACCAGCCAGA
GGGCTGCGTGGCGGTGGAGGCAGGAACGGACAAACTCATCATGCATCTCTGTGAGGAAGTCACCCCAGAGGATCAGAAGT
TCATCTTGCAGGAGGATGGTTCTTTGTTTCATGTACAGTCCAAGAAGTGTGTTCAGGCTGAGAGAGCAGAGTCAGGCAAG
AGTTTTGAGCCACTCTTGCGTGACTGCACCCACTCAGATCATCAGAAATGGTTCTTCAAGGAGCACATGGTATGA

Library Parental gene expression (RPM)
SRP014902_placenta 32 .78 RPM
SRP014902_testis 17 .82 RPM
SRP018288_heart 0 .60 RPM
SRP018288_kidney 6 .50 RPM
SRP018288_liver 0 .16 RPM
SRP018288_lung 3 .46 RPM
SRP018856_adipose 4 .76 RPM
SRP035408_brain 0 .22 RPM
SRP035408_liver 0 .09 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000002302 ortholog_one2one 1 retrogene
retro_acar_54,
Ailuropoda melanoleuca ENSAMEG00000004520 ortholog_one2one 1 retrogene
retro_amel_93,
Anas platyrhynchos ENSAPLG00000012197 ortholog_one2one 1 retrogene
retro_apla_8,
Bos taurus ENSBTAG00000009037 ortholog_one2one 1 retrogene
retro_btau_1410,
Canis familiaris ENSCAFG00000002494 ortholog_one2one 1 retrogene
retro_cfam_683,
Cavia porcellus ENSCPOG00000012418 ortholog_one2one 1 retrogene
retro_cpor_1467,
Equus caballus ENSECAG00000016546 ortholog_one2one 1 retrogene
retro_ecab_52,
Ficedula albicollis ENSFALG00000005188 ortholog_one2one 1 retrogene
retro_falb_8,
Felis catus ENSFCAG00000008831 ortholog_one2one 1 retrogene
retro_fcat_126,
Gorilla gorilla ENSGGOG00000005792 ortholog_one2one 1 retrogene
retro_ggor_890,
Loxodonta africana ENSLAFG00000022011 ortholog_one2one 1 retrogene
retro_lafr_536,
Meleagris gallopavo ENSMGAG00000007244 ortholog_one2one 1 retrogene
retro_mgal_1,
Microcebus murinus ENSMICG00000011075 ortholog_one2one 1 retrogene
retro_mmur_282,
Myotis lucifugus ENSMLUG00000002630 ortholog_one2one 1 retrogene
retro_mluc_804,
Macaca mulatta ENSMMUG00000019561 ortholog_one2one 1 retrogene
retro_mmul_888,
Mustela putorius furo ENSMPUG00000006502 ortholog_one2one 1 retrogene
retro_mputfur_569,
Mus musculus ENSMUSG00000039774 ortholog_one2one 1 retrogene
retro_mmus_183,
Nomascus leucogenys ENSNLEG00000017019 ortholog_one2one 1 retrogene
retro_nleu_940,
Oryctolagus cuniculus ENSOCUG00000016221 ortholog_one2one 1 retrogene
retro_ocun_1260,
Otolemur garnettii ENSOGAG00000001408 ortholog_one2one 2 retrogenes
retro_ogar_3253, retro_ogar_717,
Ochotona princeps ENSOPRG00000006029 ortholog_one2one 2 retrogenes
retro_opri_121, retro_opri_515,
Procavia capensis ENSPCAG00000005068 ortholog_one2one 1 retrogene
retro_pcap_63,
Pongo abelii ENSPPYG00000019437 ortholog_one2one 1 retrogene
retro_pabe_949,
Pelodiscus sinensis ENSPSIG00000017246 ortholog_one2one 1 retrogene
retro_psin_1,
Pan troglodytes ENSPTRG00000021180 ortholog_one2one 1 retrogene
retro_ptro_777,
Pteropus vampyrus ENSPVAG00000008774 ortholog_one2one 1 retrogene
retro_pvam_1347,
Rattus norvegicus ENSRNOG00000008099 ortholog_one2one 3 retrogenes
retro_rnor_1084, retro_rnor_1085, retro_rnor_2453,
Sarcophilus harrisii ENSSHAG00000017474 ortholog_one2one 1 retrogene
retro_shar_44,
Ictidomys tridecemlineatus ENSSTOG00000021306 ortholog_one2one 1 retrogene
retro_itri_41,
Tupaia belangeri ENSTBEG00000003627 ortholog_one2one 1 retrogene
retro_tbel_2065,
Tarsius syrichta ENSTSYG00000004975 ortholog_one2one 1 retrogene
retro_tsyr_386,
Tursiops truncatus ENSTTRG00000010848 ortholog_one2one 1 retrogene
retro_ttru_212,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_32 67.09 67.12
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Download FASTA sequences of all ENSSSCG00000005379 retrocopies