Parental gene:

Psmb6, ENSRNOG00000019551

Aliases:Psmb6, Psmb6l
Description:Proteasome subunit beta type-6 [Source:UniProtKB/Swiss-Prot;Acc:P28073]
Organism:Rat (Rattus norvegicus)
Coordinates:10:56888979..56891231(+)


>ENSRNOG00000019551
ATGGCGGCCGCCTTAGCTGTTCGTGGAGCCGTCTCTGCACCGGCCTTTGGGCCGGAGGCGCTCACTCCAGACTGGGAAAA
CCGAGAAGTCTCCACAGGGACCACGATCATGGCTGTGCAATTTGACGGGGGCGTGGTTCTAGGAGCAGACTCCAGAACAA
CCACTGGGTCGTACATCGCCAATCGAGTGACTGACAAGCTGACCCCTATCCACGATCACATCTTCTGCTGCCGCTCAGGC
TCGGCAGCTGATACCCAAGCAGTAGCTGATGCTGTCACGTACCAGCTTGGTTTCCACAGTATTGAGCTGAACGAGCCTCC
ACTAGTGCACACAGCCGCCAGTCTCTTTAAGGAGATGTGTTACCGCTACAGAGAAGATCTGATGGCAGGAATCATCATCG
CAGGCTGGGACCCTCAAGAAGGAGGGCAGGTGTACTCTGTTCCCATGGGAGGTATGATGGTAAGACAGTCCTTTGCCATC
GGAGGCTCCGGGAGCTCATATATCTATGGCTATGTTGATGCTACCTATCGGGAAGGCATGACCAAGGATGAATGTCTGCA
ATTCACTGCCAATGCTCTTGCTTTGGCTATGGAACGGGATGGCTCCAGTGGAGGAGTGATCCGCTTGGCAGCCATTCAAC
AGTCGGGGGTAGAGCGGCAGGTGCTTTTGGGAGACCAGATCCCCAAGGTCACCATCTCCACTTTGCCACCTCCCTGA

Library Parental gene expression (RPM)
SRP017611_brain 24 .66 RPM
SRP017611_kidney 25 .40 RPM
SRP017611_liver 19 .90 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000016075 ortholog_one2many 1 retrogene
retro_amel_1834,
Bos taurus ENSBTAG00000013390 possible_ortholog 2 retrogenes
retro_btau_1734, retro_btau_534,
Canis familiaris ENSCAFG00000015855 ortholog_one2many 1 retrogene
retro_cfam_2173,
Callithrix jacchus ENSCJAG00000012010 ortholog_one2many 1 retrogene
retro_cjac_775,
Dipodomys ordii ENSDORG00000005851 possible_ortholog 1 retrogene
retro_dord_613,
Erinaceus europaeus ENSEEUG00000002083 possible_ortholog 3 retrogenes
retro_eeur_203, retro_eeur_607, retro_eeur_71,
Felis catus ENSFCAG00000008036 possible_ortholog 2 retrogenes
retro_fcat_1813, retro_fcat_1995,
Loxodonta africana ENSLAFG00000012859 ortholog_one2many 1 retrogene
retro_lafr_874,
Macropus eugenii ENSMEUG00000010676 ortholog_one2many 1 retrogene
retro_meug_621,
Microcebus murinus ENSMICG00000014854 ortholog_one2many 2 retrogenes
retro_mmur_140, retro_mmur_718,
Monodelphis domestica ENSMODG00000005554 ortholog_many2many 1 retrogene
retro_mdom_799,
Mus musculus ENSMUSG00000018286 ortholog_one2many 2 retrogenes
retro_mmus_348, retro_mmus_3569,
Otolemur garnettii ENSOGAG00000009653 possible_ortholog 1 retrogene
retro_ogar_2114,
Pteropus vampyrus ENSPVAG00000006048 possible_ortholog 1 retrogene
retro_pvam_618,
Sorex araneus ENSSARG00000006615 ortholog_one2many 1 retrogene
retro_sara_689,
Ictidomys tridecemlineatus ENSSTOG00000014871 possible_ortholog 1 retrogene
retro_itri_514,
Tarsius syrichta ENSTSYG00000010674 possible_ortholog 1 retrogene
retro_tsyr_1807,
Tursiops truncatus ENSTTRG00000000566 ortholog_one2many 1 retrogene
retro_ttru_405,
Vicugna pacos ENSVPAG00000000595 possible_ortholog 1 retrogene
retro_vpac_400,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_56 99.58 100.00
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Download FASTA sequences of all ENSRNOG00000019551 retrocopies