Parental gene:

Dnajc17, ENSRNOG00000012368

Aliases:Dnajc17, RGD1308015
Description:dnaJ homolog subfamily C member 17 [Source:RefSeq peptide;Acc:NP_001178669]
Organism:Rat (Rattus norvegicus)
Coordinates:3:117530719..117564237(-)


>ENSRNOG00000012368
ATGGCGGTGACCAAAGAGCTCTTACAAATGGATCTGTACGCGCTGCTGGGCATTGAAGAGAAGGCGGCAGACAAAGAGGT
GAAAAAGGCCTACAGGCAAAAAGCACTCTCCTGCCACCCAGACAAAAATCCAGATAACCCCAGAGCAGCTGAACTCTTCC
ACCAGCTGTCCCAGGCCTTGGAGGTACTGACTGATGCTGCAGCCAGGGCTGCATATGACAAGGTGAGGAAAGCCAGGAAG
CAGGCTGCAGAGAGGACCCAGAGACTTGATGAGAAAAGGAAGAAAGTGAAGCTTGACCTGGAAGCCAGGGAGCGGCAGGC
CCAGGCCCAGGGTACTGAGGAAGAGGAGGAGAGCAGGAGCACCACCACACTAGAGCAGGAGATTGCTCGCCTTCGAGAAG
AGGGTTCCCGTCAACTGGAAGAGCAGCAAAGGCTGATCCAGGAGCAGATCCGCCAGGACCGAGAACAGAGGCTGAGAGGA
AGAACCGAAAATACAGAAGGCAAAGGAACCCCCAAACTAAAGCTGAAGTGGAAGTGCAAGAAGGAGGATGAGTCCCAGGG
TGGCTACTCCAGAGACATCCTCCTGAGGCTTTTACAAAAGTATGGGGAGGTTCTCAACTTGGTACTTTCCAAAAAGAAGG
CAGGCAACGCCATAGTGGAGTTTGCAACTGTCAGAGCGGCGGAGCTGGCCGTCAGAAATGAAGTGGGCCTGGCTGACAAC
CCTCTGAAGGTTTCCTGGTTGGAGGGACAGCCCCAGGGCACAGTGGACCCCAGCCCCCCAGGACTGTCGAAGGGCTCAGT
GCTGTCAGAAAGGGACTATGAGAGTCTGGTCATGATGCGCATGCGCCAGGCCGCTGAGCGCCAGCAGCTGATTGCCCAGA
TGCAGCAGGAAGATGAGGGGCGGCCCACGTAG

Library Parental gene expression (RPM)
SRP017611_brain 4 .75 RPM
SRP017611_kidney 6 .35 RPM
SRP017611_liver 3 .09 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000020803 ortholog_many2many 4 retrogenes
retro_cjac_1013, retro_cjac_4017, retro_cjac_738, retro_cjac_820,
Cavia porcellus ENSCPOG00000014110 ortholog_one2many 1 retrogene
retro_cpor_693,
Homo sapiens ENSG00000104129 ortholog_one2many 2 retrogenes
retro_hsap_2363, retro_hsap_3468,
Gorilla gorilla ENSGGOG00000000051 ortholog_one2many 1 retrogene
retro_ggor_2340,
Macropus eugenii ENSMEUG00000005641 ortholog_one2many 2 retrogenes
retro_meug_1387, retro_meug_2001,
Myotis lucifugus ENSMLUG00000014835 ortholog_many2many 1 retrogene
retro_mluc_317,
Macaca mulatta ENSMMUG00000013160 ortholog_one2many 1 retrogene
retro_mmul_1574,
Mus musculus ENSMUSG00000034278 ortholog_one2many 1 retrogene
retro_mmus_3346,
Nomascus leucogenys ENSNLEG00000003257 ortholog_one2many 1 retrogene
retro_nleu_343,
Pongo abelii ENSPPYG00000006360 ortholog_one2many 1 retrogene
retro_pabe_2864,
Pan troglodytes ENSPTRG00000006929 ortholog_one2many 2 retrogenes
retro_ptro_1729, retro_ptro_2351,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_18 89.40 99.67
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2. retro_rnor_2319 84.10 92.08
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Download FASTA sequences of all ENSRNOG00000012368 retrocopies