Parental gene:

Cbx3, ENSRNOG00000011814

Aliases:Cbx3, Hp1-gamma
Description:chromobox homolog 3 [Source:RefSeq peptide;Acc:NP_001008314]
Organism:Rat (Rattus norvegicus)
Coordinates:4:145910666..145924081(+)


>ENSRNOG00000011814
ATGGCCTCCAATAAAACTACATTGCAAAAAATGGGAAAGAAACAGAATGGAAAGAGTAAAAAAGTTGAAGAGGCAGAGCC
TGAAGAATTTGTGGTAGAAAAAGTACTGGACCGTCGTGTAGTGAATGGGAAGGTGGAGTATTTCCTGAAGTGGAAGGGGT
TCACAGATGCTGATAATACTTGGGAACCAGAAGAAAATTTAGATTGTCCAGAATTAATTGAAGCATTTCTTAATTCTCAA
AAAGCTGGTAAAGAAAAAGATGGTACAAAAAGGAAATCTTTATCTGACAGTGAATCTGATGATAGCAAATCGAAGAAGAA
GAGAGATGCTGCTGACAAGCCCAGGGGCTTTGCCAGGGGCCTTGACCCTGAGCGAATAATCGGTGCCACAGACAGCAGTG
GAGAGCTAATGTTTCTCATGAAATGGAAGGACTCAGATGAAGCTGACTTGGTGCTGGCAAAGGAGGCGAATATGAAGTGT
CCTCAGATTGTCATCGCCTTCTATGAGGAGAGGCTGACTTGGCATTCTTGTCCCGAAGATGAAGCACAATAA

Library Parental gene expression (RPM)
SRP017611_brain 42 .28 RPM
SRP017611_kidney 27 .22 RPM
SRP017611_liver 4 .24 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000005969 ortholog_one2one 1 retrogene
retro_amel_1184,
Canis familiaris ENSCAFG00000002897 ortholog_one2one 11 retrogenes
retro_cfam_1157, retro_cfam_161, retro_cfam_1811, retro_cfam_1823, retro_cfam_1849, retro_cfam_2083, retro_cfam_502, retro_cfam_594, retro_cfam_739, retro_cfam_931, retro_cfam_948,
Callithrix jacchus ENSCJAG00000007952 ortholog_one2one 8 retrogenes
retro_cjac_1100, retro_cjac_1414, retro_cjac_1612, retro_cjac_2405, retro_cjac_2623, retro_cjac_2728, retro_cjac_3322, retro_cjac_869,
Dipodomys ordii ENSDORG00000005487 possible_ortholog 11 retrogenes
retro_dord_309, retro_dord_405, retro_dord_437, retro_dord_440, retro_dord_456, retro_dord_502, retro_dord_629, retro_dord_630, retro_dord_655, retro_dord_700, retro_dord_780,
Equus caballus ENSECAG00000012780 possible_ortholog 1 retrogene
retro_ecab_784,
Gorilla gorilla ENSGGOG00000025853 ortholog_one2one 6 retrogenes
retro_ggor_1928, retro_ggor_2281, retro_ggor_2466, retro_ggor_2467, retro_ggor_635, retro_ggor_845,
Loxodonta africana ENSLAFG00000006907 possible_ortholog 3 retrogenes
retro_lafr_661, retro_lafr_687, retro_lafr_776,
Myotis lucifugus ENSMLUG00000007591 possible_ortholog 2 retrogenes
retro_mluc_2486, retro_mluc_813,
Mus musculus ENSMUSG00000029836 possible_ortholog 1 retrogene
retro_mmus_77,
Otolemur garnettii ENSOGAG00000016583 possible_ortholog 1 retrogene
retro_ogar_136,
Ochotona princeps ENSOPRG00000011713 ortholog_one2many 9 retrogenes
retro_opri_103, retro_opri_159, retro_opri_209, retro_opri_300, retro_opri_429, retro_opri_569, retro_opri_598, retro_opri_728, retro_opri_733,
Procavia capensis ENSPCAG00000004904 possible_ortholog 2 retrogenes
retro_pcap_108, retro_pcap_166,
Pongo abelii ENSPPYG00000017714 possible_ortholog 10 retrogenes
retro_pabe_2112, retro_pabe_2243, retro_pabe_2724, retro_pabe_2770, retro_pabe_2997, retro_pabe_3608, retro_pabe_758, retro_pabe_786, retro_pabe_892, retro_pabe_951,
Pan troglodytes ENSPTRG00000019003 possible_ortholog 10 retrogenes
retro_ptro_17, retro_ptro_1706, retro_ptro_1875, retro_ptro_2289, retro_ptro_2475, retro_ptro_395, retro_ptro_537, retro_ptro_630, retro_ptro_729, retro_ptro_780,
Pteropus vampyrus ENSPVAG00000006297 possible_ortholog 2 retrogenes
retro_pvam_294, retro_pvam_786,
Rattus norvegicus ENSRNOG00000008689 within_species_paralog 2 retrogenes
retro_rnor_2388, retro_rnor_2841,
Rattus norvegicus ENSRNOG00000036841 within_species_paralog 1 retrogene
retro_rnor_1727,
Sarcophilus harrisii ENSSHAG00000017913 ortholog_one2many 1 retrogene
retro_shar_153,
Sus scrofa ENSSSCG00000016711 ortholog_one2many 4 retrogenes
retro_sscr_1031, retro_sscr_204, retro_sscr_420, retro_sscr_755,
Ictidomys tridecemlineatus ENSSTOG00000006223 ortholog_one2one 4 retrogenes
retro_itri_1093, retro_itri_1682, retro_itri_1764, retro_itri_912,
Tarsius syrichta ENSTSYG00000008159 possible_ortholog 6 retrogenes
retro_tsyr_1459, retro_tsyr_1545, retro_tsyr_1552, retro_tsyr_1645, retro_tsyr_203, retro_tsyr_583,
Tursiops truncatus ENSTTRG00000000711 possible_ortholog 7 retrogenes
retro_ttru_1238, retro_ttru_1247, retro_ttru_1851, retro_ttru_294, retro_ttru_52, retro_ttru_591, retro_ttru_644,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_120 93.44 100.00
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2. retro_rnor_301 98.91 100.00
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Download FASTA sequences of all ENSRNOG00000011814 retrocopies