Parental gene:

Atp1b3, ENSRNOG00000011501

Aliases:Atp1b3, NKAB3S
Description:Sodium/potassium-transporting ATPase subunit beta-3 [Source:UniProtKB/Swiss-Prot;Acc:Q63377]
Organism:Rat (Rattus norvegicus)
Coordinates:8:103638323..103669634(-)


>ENSRNOG00000011501
ATGACGAAGACTGAGAAGAAATCCTTCCACCAGAGCCTGGCCGAGTGGAAGCTGTTCATCTACAACCCGACCAGCGGAGA
GTTTCTGGGGCGCACCTCCAAGAGCTGGGGTCTCATCTTGCTCTTCTACCTAGTTTTTTATGGGTTCTTGGCTGCACTCT
TCACATTCACCATGTGGGTCATGCTCCAGACTCTGAATGACGAGGTTCCGAAGTACCGAGACCAGATTCCTAGTCCAGGA
CTTATGGTTTTCCCCAAACCACCGACTGCCTTGGATTATACATACAGCATGTCTGACCCACATACTTATAAAAAGTTTGT
TGAAGACCTGAAGAATTTCCTAAAGCCATATTCTGTGGAAGAACAGAAGAATCTCACAGATTGCCCTGGTGGAGCACTTT
TTCATCAGGAGGGTCCAGACTATAGTGCGTGTCAGTTCCCAGTTTCCTTGCTTCAAGAATGTAGTGGTGTGAATGATTCT
AATTTTGGCTACTCCAAAGGACAACCTTGTGTTCTTGTGAAGATGAACAGAATAATCGAGTTAGTCCCAGATGGAGCTCC
ATATATTACATGTATAACAAAGGAAGAAAACATAGCAAATATAGTAACTTATCCTGATGATGGACTTATAGACTTAAAGT
ATTTTCCATATTATGGGAAAAAACGGCACGTTGGATATCGACAGCCCCTAGTTGCCGTCCAGGTCATATTTGGGGCCGAT
GCTACCAAGAAAGAAGTAACAATTGAGTGCCAAATTGATGGAACCAGGAACCTAAAAAACAAGAATGAACGTGACAAGTT
CTTGGGACGAGTTTCATTTAAAGTCATAGCACATGCCTAG

Library Parental gene expression (RPM)
SRP017611_brain 62 .77 RPM
SRP017611_kidney 81 .16 RPM
SRP017611_liver 17 .21 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000014140 ortholog_one2one 5 retrogenes
retro_btau_1136, retro_btau_1322, retro_btau_1743, retro_btau_318, retro_btau_920,
Choloepus hoffmanni ENSCHOG00000007515 ortholog_one2one 4 retrogenes
retro_chof_1000, retro_chof_1421, retro_chof_2393, retro_chof_2445,
Callithrix jacchus ENSCJAG00000001981 ortholog_one2many 1 retrogene
retro_cjac_309,
Cavia porcellus ENSCPOG00000003739 ortholog_one2many 4 retrogenes
retro_cpor_1181, retro_cpor_1468, retro_cpor_1506, retro_cpor_222,
Equus caballus ENSECAG00000019885 ortholog_one2one 2 retrogenes
retro_ecab_1084, retro_ecab_468,
Homo sapiens ENSG00000069849 ortholog_one2one 2 retrogenes
retro_hsap_1387, retro_hsap_2263,
Loxodonta africana ENSLAFG00000010553 ortholog_one2one 1 retrogene
retro_lafr_815,
Mus musculus ENSMUSG00000032412 ortholog_one2one 2 retrogenes
retro_mmus_2174, retro_mmus_3427,
Nomascus leucogenys ENSNLEG00000004663 ortholog_one2one 1 retrogene
retro_nleu_1286,
Otolemur garnettii ENSOGAG00000008662 ortholog_one2one 1 retrogene
retro_ogar_2284,
Procavia capensis ENSPCAG00000013927 ortholog_one2one 1 retrogene
retro_pcap_350,
Pongo abelii ENSPPYG00000014169 ortholog_one2one 1 retrogene
retro_pabe_1953,
Pan troglodytes ENSPTRG00000015476 ortholog_one2one 2 retrogenes
retro_ptro_1603, retro_ptro_951,
Sus scrofa ENSSSCG00000011676 ortholog_one2many 3 retrogenes
retro_sscr_889, retro_sscr_945, retro_sscr_95,
Ictidomys tridecemlineatus ENSSTOG00000013235 ortholog_one2one 1 retrogene
retro_itri_1663,
Tupaia belangeri ENSTBEG00000001004 ortholog_one2many 1 retrogene
retro_tbel_3620,
Tarsius syrichta ENSTSYG00000000222 ortholog_one2one 1 retrogene
retro_tsyr_330,
Tursiops truncatus ENSTTRG00000012038 ortholog_one2one 1 retrogene
retro_ttru_333,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_789 70.05 72.40
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2. retro_rnor_2571 95.80 84.95
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Download FASTA sequences of all ENSRNOG00000011501 retrocopies