Parental gene:

ENSCJAG00000001981

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:17:34718859..34743799(-)


>ENSCJAG00000001981
TTGATCTTGCTCTTCTACCTAGTTTTTTATGGGTTCCTGGCTGCACTCTTCTCATTCACGATGTGGGTTATGCTTCAGAC
TCTCAACGATGAGGTTCCAAAATATCGTGACCAGATTCCTAGCCCAGGACTTATGGTTTTTCCAAAACCAGTGACTGCAT
TGGAATACACATTCAGTGTGTCTGACCCAACTTCCTATGCAGGGTACATTGCAGACCTTAAGAAGTTTCTAAAACCATAT
ACTTTAGAAGAACAGAAGAACCTCACAACCTGTCCTGATGGAGCACTTTTTGAACAGAAGGGTCCCGTTTATGTTGCATG
TCAGTTTCCTCTTTTGTTACTTCAAGCATGCAGTGGTATGAGTGATCCTGATTTTGGCTATTCTAAAGGAAAACCTTGTA
TTCTTGTGAAAATGAACAGAATAATTGGATTAAAGCCTGAAGGAGTGCCAAGGATAGATTGTGTTTTGAAGAATGAAGAT
CAAACAAATATAACAACTTATCCTCATAATGGAATGATAGACTTAAAATATTTCCCATATTATGGGAAAAAACTGCATGT
GGGGTATCTACAGCCATTAGTTGCTGTTCAGGTCACCTTGGCTCCCAGCAGTGCTGAGAAAGAAGTAACAGTTGAGTGCA
AGATTGATGGATCGCCTAACCTAAAAAGCCAGGATGATCGTGACAAGTTTTTGGGACGAGTTATGTTCAAAATCACAGCA
CATGCATAG

Library Parental gene expression (RPM)
SRP051959_colon 35 .10 RPM
SRP051959_heart 4 .63 RPM
SRP051959_kidney 5 .57 RPM
SRP051959_liver 2 .75 RPM
SRP051959_lung 11 .75 RPM
SRP051959_lymph_node 14 .41 RPM
SRP051959_skeletal_muscle 2 .10 RPM
SRP051959_spleen 10 .90 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000014140 ortholog_one2many 5 retrogenes
retro_btau_1136, retro_btau_1322, retro_btau_1743, retro_btau_318, retro_btau_920,
Choloepus hoffmanni ENSCHOG00000007515 ortholog_one2many 4 retrogenes
retro_chof_1000, retro_chof_1421, retro_chof_2393, retro_chof_2445,
Callithrix jacchus ENSCJAG00000010317 within_species_paralog 1 retrogene
retro_cjac_2288,
Cavia porcellus ENSCPOG00000003739 ortholog_many2many 4 retrogenes
retro_cpor_1181, retro_cpor_1468, retro_cpor_1506, retro_cpor_222,
Equus caballus ENSECAG00000019885 ortholog_one2many 2 retrogenes
retro_ecab_1084, retro_ecab_468,
Homo sapiens ENSG00000069849 ortholog_one2many 2 retrogenes
retro_hsap_1387, retro_hsap_2263,
Loxodonta africana ENSLAFG00000010553 ortholog_one2many 1 retrogene
retro_lafr_815,
Mus musculus ENSMUSG00000032412 ortholog_one2many 2 retrogenes
retro_mmus_2174, retro_mmus_3427,
Nomascus leucogenys ENSNLEG00000004663 ortholog_one2many 1 retrogene
retro_nleu_1286,
Otolemur garnettii ENSOGAG00000008662 ortholog_one2many 1 retrogene
retro_ogar_2284,
Procavia capensis ENSPCAG00000013927 ortholog_one2many 1 retrogene
retro_pcap_350,
Pongo abelii ENSPPYG00000014169 ortholog_one2many 1 retrogene
retro_pabe_1953,
Pan troglodytes ENSPTRG00000015476 ortholog_one2many 2 retrogenes
retro_ptro_1603, retro_ptro_951,
Rattus norvegicus ENSRNOG00000011501 ortholog_one2many 2 retrogenes
retro_rnor_2571, retro_rnor_789,
Sus scrofa ENSSSCG00000011676 ortholog_many2many 3 retrogenes
retro_sscr_889, retro_sscr_945, retro_sscr_95,
Ictidomys tridecemlineatus ENSSTOG00000013235 ortholog_one2many 1 retrogene
retro_itri_1663,
Tupaia belangeri ENSTBEG00000001004 ortholog_many2many 1 retrogene
retro_tbel_3620,
Tarsius syrichta ENSTSYG00000000222 ortholog_one2many 1 retrogene
retro_tsyr_330,
Tursiops truncatus ENSTTRG00000012038 ortholog_one2many 1 retrogene
retro_ttru_333,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_309 98.76 100.00
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Download FASTA sequences of all ENSCJAG00000001981 retrocopies