Parental gene:

NDUFB4, ENSPTRG00000015270

Aliases:None
Description:Pan troglodytes NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 4, 15kDa (NDUFB4), nuclear gene encoding mitochondrial protein, mRNA. [Source:RefSeq mRNA;Acc:NM_001071792]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:3:123956759..123962919(+)


>ENSPTRG00000015270
ATGTCGTTCCCAAAGTATAAGCCGTCGAGCCTGCGCACTCTGCCTGAGACCCTCGACCCAGCCGAATACAACATATCTCC
GGAAACCCGGCGGGCGCAAGCCGAGCGGTTGGCCATAAGAGCCCAGCTGAAACGAGAGTACCTGCTTCAGTACAACGATC
CCAACCGCCGAGGGCTCATCGAAAATCCTGCCTTGCTTCGTTGGGCCTATGCAAGAACAATAAATGTCTATCCTAATTTC
AGACCCACTCCTAAAAACTCACTCATGGGAGCTCTGTGTGGATTTGGGCCCCTCATCTTCATTTATTATATTATCAAAAC
TGAGAGGGATAGGAAAGAAAAACTTATCCAGGAAGGAAAATTGGATCGAACATTTCACCTCTCATATTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 42 .36 RPM
SRP007412_cerebellum 28 .93 RPM
SRP007412_heart 78 .14 RPM
SRP007412_kidney 50 .11 RPM
SRP007412_liver 27 .33 RPM
SRP007412_testis 28 .88 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000011462 ortholog_one2one 1 retrogene
retro_acar_74,
Ailuropoda melanoleuca ENSAMEG00000004761 ortholog_one2one 2 retrogenes
retro_amel_1289, retro_amel_1491,
Bos taurus ENSBTAG00000015892 ortholog_one2many 2 retrogenes
retro_btau_184, retro_btau_995,
Choloepus hoffmanni ENSCHOG00000000006 ortholog_one2one 2 retrogenes
retro_chof_188, retro_chof_777,
Callithrix jacchus ENSCJAG00000008695 ortholog_one2many 4 retrogenes
retro_cjac_1290, retro_cjac_2140, retro_cjac_302, retro_cjac_3251,
Danio rerio ENSDARG00000019332 ortholog_one2one 1 retrogene
retro_drer_32,
Dasypus novemcinctus ENSDNOG00000024123 ortholog_one2one 4 retrogenes
retro_dnov_1290, retro_dnov_1833, retro_dnov_394, retro_dnov_486,
Homo sapiens ENSG00000065518 ortholog_one2one 6 retrogenes
retro_hsap_1378, retro_hsap_1729, retro_hsap_2238, retro_hsap_2656, retro_hsap_2926, retro_hsap_3103,
Gorilla gorilla ENSGGOG00000013923 ortholog_one2one 2 retrogenes
retro_ggor_1853, retro_ggor_2265,
Loxodonta africana ENSLAFG00000021459 ortholog_one2one 1 retrogene
retro_lafr_1078,
Microcebus murinus ENSMICG00000005226 ortholog_one2one 4 retrogenes
retro_mmur_1409, retro_mmur_1415, retro_mmur_882, retro_mmur_915,
Myotis lucifugus ENSMLUG00000027951 ortholog_one2one 3 retrogenes
retro_mluc_1433, retro_mluc_2010, retro_mluc_489,
Macaca mulatta ENSMMUG00000001592 ortholog_one2one 4 retrogenes
retro_mmul_1217, retro_mmul_1514, retro_mmul_1979, retro_mmul_356,
Monodelphis domestica ENSMODG00000018229 ortholog_one2one 1 retrogene
retro_mdom_1658,
Mustela putorius furo ENSMPUG00000008272 ortholog_one2many 1 retrogene
retro_mputfur_81,
Mus musculus ENSMUSG00000022820 ortholog_one2one 4 retrogenes
retro_mmus_1075, retro_mmus_1077, retro_mmus_1405, retro_mmus_1820,
Nomascus leucogenys ENSNLEG00000007706 ortholog_one2one 4 retrogenes
retro_nleu_134, retro_nleu_2889, retro_nleu_2989, retro_nleu_762,
Otolemur garnettii ENSOGAG00000005956 ortholog_one2one 5 retrogenes
retro_ogar_1454, retro_ogar_1917, retro_ogar_1922, retro_ogar_2874, retro_ogar_3091,
Pongo abelii ENSPPYG00000013503 ortholog_one2one 3 retrogenes
retro_pabe_1526, retro_pabe_2500, retro_pabe_2565,
Rattus norvegicus ENSRNOG00000002721 ortholog_one2many 3 retrogenes
retro_rnor_275, retro_rnor_291, retro_rnor_99,
Sorex araneus ENSSARG00000012482 ortholog_one2one 1 retrogene
retro_sara_600,
Ictidomys tridecemlineatus ENSSTOG00000020092 ortholog_one2many 3 retrogenes
retro_itri_3, retro_itri_666, retro_itri_786,
Tarsius syrichta ENSTSYG00000006456 ortholog_one2one 7 retrogenes
retro_tsyr_1062, retro_tsyr_109, retro_tsyr_1617, retro_tsyr_1635, retro_tsyr_410, retro_tsyr_627, retro_tsyr_736,
Tursiops truncatus ENSTTRG00000016658 ortholog_one2one 1 retrogene
retro_ttru_625,
Vicugna pacos ENSVPAG00000003774 ortholog_one2one 1 retrogene
retro_vpac_251,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_947 57.83 63.57
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2. retro_ptro_1226 75.19 100.00
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3. retro_ptro_1582 73.33 68.99
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4. retro_ptro_1791 71.32 100.00
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5. retro_ptro_1980 91.47 100.00
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6. retro_ptro_2099 68.55 96.12
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Download FASTA sequences of all ENSPTRG00000015270 retrocopies