Parental gene:

CALM3, ENSPTRG00000011901

Aliases:None
Description:Pan troglodytes calmodulin 2 (phosphorylase kinase, delta) (CALM2), mRNA. [Source:RefSeq mRNA;Acc:NM_001098558]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:2A:47909121..47925989(-)


>ENSPTRG00000011901
ATGGCTGACCAACTGACTGAAGAGCAGATTGCAGAATTCAAAGAAGCTTTTTCACTATTTGACAAAGATGGTGATGGAAC
TATAACAACAAAGGAATTGGGAACTGTAATGAGATCTCTTGGGCAGAATCCCACAGAAGCAGAGTTACAGGACATGATTA
ATGAAGTAGATGCTGATGGTAATGGCACAATTGACTTCCCTGAATTTCTGACAATGATGGCAAGAAAAATGAAAGACACA
GACAGTGAAGAAGAAATTAGAGAAGCATTCCGTGTGTTTGATAAGGATGGCAATGGCTATATTAGTGCTGCAGAACTTCG
CCATGTGATGACAAACCTTGGAGAGAAGTTAACAGATGAAGAAGTTGATGAAATGATCAGGGAAGCAGATATTGATGGTG
ATGGTCAAGTAAACTATGAAGAGTTTGTACAAATGATGACAGCAAAGTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 332 .61 RPM
SRP007412_cerebellum 318 .69 RPM
SRP007412_heart 117 .11 RPM
SRP007412_kidney 119 .41 RPM
SRP007412_liver 91 .85 RPM
SRP007412_testis 783 .52 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000015712 possible_ortholog 1 retrogene
retro_acar_45,
Ailuropoda melanoleuca ENSAMEG00000006204 ortholog_one2one 2 retrogenes
retro_amel_63, retro_amel_72,
Choloepus hoffmanni ENSCHOG00000008245 ortholog_one2one 6 retrogenes
retro_chof_1940, retro_chof_2261, retro_chof_367, retro_chof_735, retro_chof_833, retro_chof_965,
Callithrix jacchus ENSCJAG00000000638 ortholog_one2one 4 retrogenes
retro_cjac_1039, retro_cjac_1401, retro_cjac_2859, retro_cjac_4097,
Cavia porcellus ENSCPOG00000012181 ortholog_one2many 3 retrogenes
retro_cpor_1012, retro_cpor_87, retro_cpor_89,
Equus caballus ENSECAG00000008396 ortholog_one2one 4 retrogenes
retro_ecab_15, retro_ecab_59, retro_ecab_750, retro_ecab_882,
Echinops telfairi ENSETEG00000009377 possible_ortholog 5 retrogenes
retro_etel_1062, retro_etel_1542, retro_etel_1812, retro_etel_587, retro_etel_854,
Ficedula albicollis ENSFALG00000012828 ortholog_one2one 1 retrogene
retro_falb_16,
Felis catus ENSFCAG00000029141 ortholog_one2one 5 retrogenes
retro_fcat_1926, retro_fcat_591, retro_fcat_629, retro_fcat_87, retro_fcat_88,
Gadus morhua ENSGMOG00000009342 possible_ortholog 1 retrogene
retro_gmor_23,
Latimeria chalumnae ENSLACG00000005059 possible_ortholog 1 retrogene
retro_lcha_53,
Loxodonta africana ENSLAFG00000009865 possible_ortholog 1 retrogene
retro_lafr_655,
Myotis lucifugus ENSMLUG00000029016 ortholog_one2one 6 retrogenes
retro_mluc_13, retro_mluc_1732, retro_mluc_18, retro_mluc_19, retro_mluc_2207, retro_mluc_2258,
Macaca mulatta ENSMMUG00000017466 ortholog_one2many 1 retrogene
retro_mmul_256,
Monodelphis domestica ENSMODG00000009222 possible_ortholog 1 retrogene
retro_mdom_1126,
Mustela putorius furo ENSMPUG00000012061 ortholog_one2one 4 retrogenes
retro_mputfur_1207, retro_mputfur_21, retro_mputfur_838, retro_mputfur_942,
Oryctolagus cuniculus ENSOCUG00000002107 ortholog_one2one 2 retrogenes
retro_ocun_1468, retro_ocun_84,
Otolemur garnettii ENSOGAG00000008824 ortholog_one2many 6 retrogenes
retro_ogar_1126, retro_ogar_1196, retro_ogar_1432, retro_ogar_1535, retro_ogar_209, retro_ogar_2326,
Ochotona princeps ENSOPRG00000015478 ortholog_one2one 7 retrogenes
retro_opri_1129, retro_opri_1155, retro_opri_16, retro_opri_40, retro_opri_506, retro_opri_830, retro_opri_86,
Petromyzon marinus ENSPMAG00000003323 possible_ortholog 1 retrogene
retro_pmar_12,
Pongo abelii ENSPPYG00000012430 ortholog_one2one 5 retrogenes
retro_pabe_1068, retro_pabe_1133, retro_pabe_115, retro_pabe_45, retro_pabe_599,
Pelodiscus sinensis ENSPSIG00000013173 possible_ortholog 1 retrogene
retro_psin_9,
Pan troglodytes ENSPTRG00000006626 within_species_paralog 1 retrogene
retro_ptro_3043,
Pteropus vampyrus ENSPVAG00000005183 ortholog_one2one 2 retrogenes
retro_pvam_558, retro_pvam_560,
Sorex araneus ENSSARG00000008731 ortholog_one2one 1 retrogene
retro_sara_119,
Sus scrofa ENSSSCG00000008433 ortholog_one2many 1 retrogene
retro_sscr_228,
Ictidomys tridecemlineatus ENSSTOG00000021814 ortholog_one2one 7 retrogenes
retro_itri_1048, retro_itri_1473, retro_itri_37, retro_itri_433, retro_itri_68, retro_itri_778, retro_itri_859,
Tupaia belangeri ENSTBEG00000000569 ortholog_one2one 17 retrogenes
retro_tbel_1450, retro_tbel_24, retro_tbel_2418, retro_tbel_258, retro_tbel_2612, retro_tbel_2856, retro_tbel_2933, retro_tbel_3150, retro_tbel_3195, retro_tbel_3956, retro_tbel_4141, retro_tbel_4171, retro_tbel_4212, retro_tbel_4324, retro_tbel_675, retro_tbel_722, retro_tbel_765,
Taeniopygia guttata ENSTGUG00000002581 ortholog_one2one 1 retrogene
retro_tgut_6,
Tarsius syrichta ENSTSYG00000012564 ortholog_one2one 5 retrogenes
retro_tsyr_1641, retro_tsyr_2012, retro_tsyr_2128, retro_tsyr_2148, retro_tsyr_576,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_83 84.56 100.00
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2. retro_ptro_881 79.35 61.74
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3. retro_ptro_1195 83.56 97.99
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4. retro_ptro_2623 82.12 100.00
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Download FASTA sequences of all ENSPTRG00000011901 retrocopies