Parental gene:

HMGN1, ENSPPYG00000011426

Aliases:None
Description:high mobility group nucleosome binding domain 1 [Source:HGNC Symbol;Acc:4984]
Organism:Orangutan (Pongo abelii)
Coordinates:21:40421572..40428693(-)


>ENSPPYG00000011426
ATGCCCAAGAGGAAGGTCAGCTCCGCCGAAGGCGCCGCCAAGGAAGAGCCCAAGAGGAGATCGGCGCGGTTGTCAGCTAA
ACCTCCTGCAAAAGTGGAAGCGAAGCCGAAGAAGGCAGCAGCGAAGGATAAATCTTCAGACAAAAAAGTGCAAACAAAAG
GGAAAAGGGGAGCAAAGGGGAAACAGGCCGAAGTGGCTAACCAAGAAACTAAAGAAGATTTACCTGCAGAAAACGGGGAA
ACGAAAACTGAGGAGAGTCCAGCCTCTGATGAAGCAGGAGAGAAAGAAGCCAAGTCTGATTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 21 .67 RPM
SRP007412_cerebellum 44 .75 RPM
SRP007412_heart 14 .33 RPM
SRP007412_kidney 76 .60 RPM
SRP007412_liver 35 .83 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000014100 ortholog_one2many 11 retrogenes
retro_amel_1103, retro_amel_1157, retro_amel_1307, retro_amel_1378, retro_amel_1580, retro_amel_1839, retro_amel_349, retro_amel_352, retro_amel_408, retro_amel_439, retro_amel_670,
Bos taurus ENSBTAG00000018768 possible_ortholog 12 retrogenes
retro_btau_1178, retro_btau_1475, retro_btau_1560, retro_btau_1746, retro_btau_1801, retro_btau_388, retro_btau_504, retro_btau_572, retro_btau_607, retro_btau_617, retro_btau_897, retro_btau_928,
Canis familiaris ENSCAFG00000010045 possible_ortholog 12 retrogenes
retro_cfam_1056, retro_cfam_1233, retro_cfam_1318, retro_cfam_1392, retro_cfam_1522, retro_cfam_1667, retro_cfam_1904, retro_cfam_2202, retro_cfam_292, retro_cfam_404, retro_cfam_634, retro_cfam_649,
Cavia porcellus ENSCPOG00000002336 possible_ortholog 7 retrogenes
retro_cpor_1129, retro_cpor_1389, retro_cpor_334, retro_cpor_349, retro_cpor_4, retro_cpor_884, retro_cpor_949,
Equus caballus ENSECAG00000019029 ortholog_one2many 5 retrogenes
retro_ecab_1130, retro_ecab_285, retro_ecab_362, retro_ecab_800, retro_ecab_848,
Homo sapiens ENSG00000205581 ortholog_one2one 7 retrogenes
retro_hsap_1097, retro_hsap_1418, retro_hsap_1581, retro_hsap_1758, retro_hsap_1874, retro_hsap_3370, retro_hsap_762,
Monodelphis domestica ENSMODG00000020972 ortholog_many2many 5 retrogenes
retro_mdom_1085, retro_mdom_109, retro_mdom_284, retro_mdom_755, retro_mdom_88,
Otolemur garnettii ENSOGAG00000010329 ortholog_many2many 35 retrogenes
retro_ogar_1062, retro_ogar_1186, retro_ogar_1245, retro_ogar_1304, retro_ogar_1355, retro_ogar_1437, retro_ogar_1527, retro_ogar_1529, retro_ogar_175, retro_ogar_1812, retro_ogar_1901, retro_ogar_1932, retro_ogar_2057, retro_ogar_2311, retro_ogar_2325, retro_ogar_2522, retro_ogar_2523, retro_ogar_266, retro_ogar_2712, retro_ogar_2729, retro_ogar_278, retro_ogar_2913, retro_ogar_2964, retro_ogar_3095, retro_ogar_3133, retro_ogar_3138, retro_ogar_3155, retro_ogar_333, retro_ogar_3354, retro_ogar_370, retro_ogar_393, retro_ogar_657, retro_ogar_699, retro_ogar_723, retro_ogar_958,
Pan troglodytes ENSPTRG00000031426 ortholog_one2many 22 retrogenes
retro_ptro_1256, retro_ptro_1299, retro_ptro_1301, retro_ptro_1454, retro_ptro_1556, retro_ptro_1740, retro_ptro_1821, retro_ptro_1830, retro_ptro_2058, retro_ptro_2290, retro_ptro_2559, retro_ptro_2716, retro_ptro_3119, retro_ptro_3278, retro_ptro_363, retro_ptro_463, retro_ptro_586, retro_ptro_61, retro_ptro_637, retro_ptro_696, retro_ptro_970, retro_ptro_980,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_123 96.67 90.00
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2. retro_pabe_251 80.00 100.00
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3. retro_pabe_504 84.16 99.00
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4. retro_pabe_698 62.38 99.00
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5. retro_pabe_699 74.76 99.00
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6. retro_pabe_702 90.20 100.00
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7. retro_pabe_760 52.48 100.00
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8. retro_pabe_1066 75.53 92.00
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9. retro_pabe_1149 75.81 60.00
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10. retro_pabe_1172 80.00 87.00
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11. retro_pabe_1190 81.00 100.00
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12. retro_pabe_1264 69.88 80.00
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13. retro_pabe_1302 69.00 99.00
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14. retro_pabe_1504 62.38 100.00
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15. retro_pabe_1604 71.57 99.00
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16. retro_pabe_1842 70.00 86.00
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17. retro_pabe_2152 66.67 91.00
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18. retro_pabe_2211 80.00 100.00
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19. retro_pabe_2284 64.63 79.00
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20. retro_pabe_2380 59.15 69.00
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21. retro_pabe_2518 85.15 100.00
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22. retro_pabe_2771 66.67 98.00
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23. retro_pabe_3086 84.78 91.00
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24. retro_pabe_3648 73.68 95.00
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25. retro_pabe_3825 91.55 71.00
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Download FASTA sequences of all ENSPPYG00000011426 retrocopies