Parental gene:

ENSPPYG00000006153

Aliases:None
Description:None
Organism:Orangutan (Pongo abelii)
Coordinates:14:103705446..103710632(-)


>ENSPPYG00000006153
ATGGAAGCTTTGCAGGCTGGTGCGGATATCTCTATGATTGGCCAGTTCGGTGTTGGTTTTTATTCTGCTTATTTGGTTGC
TGAGAAAGTAACTGTGATCACCAAACATAACGATGATGAGCAGTACGCCTGGGAGTCCTCAGCAGGGGGATCATTCACAG
TGAGGACAGACACAGGTGAACCTATGGGTCGTGGAACAAAGGTTATCCTACACCTGAAAGAAGACCAAACTGAGTACTTA
GAGGAACGAAGAATAAAGGAGATTGTGAAGAAACATTCTCAGTTTATTGGATATCCCATTACTCTTTTTGTGGAGAAGGA
ACGTGATAAAGAAGTCAGCGATGATGAGGCTGAAGAAAAGGAAGACAAAGAAGAAGAAAAAGAAAAAGAAGAGAAAGAGT
CGGAAGACAAACCTGAAATTGAAGATGTTGGTTCTGATGAGGAAGAAGAAGAAAAGAAGGATGGTGATAAGAAGAAGAAG
AAAAAGATTAAGGAAAAGTACATCGACCAAGAAGAACTCAACAAAACAAAGCCCATCTGGACCAGAAATCCCGACGATAT
TACTAATGAGGAGTACGGAGAATTCTACAAGAGCTTGACCAATGATTGGGAAGATCACTTGGCAGTGAAGCATTTTTCAG
TTGAAGGACAGTTGGAATTCAGAGCTCTTCTATTTGTCCCACGACGTGCTCCTTTTGACCTGTTTGAAAACAGAAAGAAA
AAGAACAACATCAAATTGTATGTACGCAGAGTTTTCATCATGGATAACTGTGAGGAGCTAATCCCTGAATATCTGAATTT
CATTAGAGGGGTGGTAGACTCAGAGGATCTCCCTCTAAACATTTCCCGTGAGATGTTGCAACAAAGCAAAATTTTGAAAG
TTATCAGGAAGAATTTGGTCAAAAAATGTTTAGAACTTTTTACTGAACTGGCAGAAGATAAAGAGAACTACAAGAAATTC
TATGAGCAGTTCTCTAAAAACATAAAGCTTGGAATACACGAAGACTCTCAAAATCGGAAGAAGCTTTCAGAGCTGTTAAG
GTACTACACGTCTGCCTCTGGTGATGAGATGGTTTCTCTCAAGGACTACTGCACCAGAATGAAGGAAAACCAGAAACATA
TCTATTATATCACAGGTGAGACCAAGGACCAGGTAGCTAACTCAGCCTTTGTGGAACGTCTTCGGAAACATGGCTTAGAA
GTGATCTATATGATTGAGCCCATTGATGAGTACTGTGTCCAACAGCTGAAGGAATTTGAGGGGAAGACTTTAGTGTCAGT
CACCAAAGAAGGCCTGGAACTTCCAGAGGATGAAGAAGAGAAAAAGAAACAGGAAGAGAAAAAAACAAAGTTTGAGAACC
TCTGCAAAATCATGAAAGACATATTGGAGAAAAAAGTTGAAAAGGTGGTTGTGTCAAACCGATTGGTGACGTCTCCATGC
TGTATTGTCACGAGCACATACGGCTGGACAGCAAACATGGAGAGAATCATGAAAGCTCAAGCCCTAAGAGACAACTCAAC
AATGGGTTACATGGCAGCCAAGAAACACCTGGAGATAAACCCTGACCATTCCATTATTGAGACCTTAAGGCAAAAGGCAG
AGGCTGATAAGAACGACAAGTCTGTGAAGGATCTGGTCATCTTGCTTTATGAAACTGCGCTCCTGTCTTCTGGCTTCAGT
CTGGAAGATCCCCAGACACATGCTAATAGGATCTACAGGATGATCAAACTTGGTCTGGGTATTGATGAAGATGACCCTAC
TGCTGATGATACCAGTGCTGCTGTAACTGAAGAAATGCCGCCCCTCGAAGGAGATGACGACACATCACGCATGGAAGAAG
TAGACTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 1114 .11 RPM
SRP007412_cerebellum 1481 .95 RPM
SRP007412_heart 453 .18 RPM
SRP007412_kidney 612 .62 RPM
SRP007412_liver 502 .66 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000006270 possible_ortholog 1 retrogene
retro_btau_501,
Canis familiaris ENSCAFG00000018036 ortholog_one2many 1 retrogene
retro_cfam_1094,
Callithrix jacchus ENSCJAG00000033945 possible_ortholog 8 retrogenes
retro_cjac_1818, retro_cjac_2300, retro_cjac_2835, retro_cjac_3514, retro_cjac_3596, retro_cjac_3601, retro_cjac_3626, retro_cjac_502,
Cavia porcellus ENSCPOG00000002015 possible_ortholog 1 retrogene
retro_cpor_1372,
Homo sapiens ENSG00000080824 possible_ortholog 2 retrogenes
retro_hsap_237, retro_hsap_859,
Macaca mulatta ENSMMUG00000011073 possible_ortholog 2 retrogenes
retro_mmul_1526, retro_mmul_2313,
Monodelphis domestica ENSMODG00000013302 ortholog_many2many 3 retrogenes
retro_mdom_1653, retro_mdom_2010, retro_mdom_817,
Mus musculus ENSMUSG00000021270 possible_ortholog 1 retrogene
retro_mmus_2139,
Nomascus leucogenys ENSNLEG00000015925 possible_ortholog 3 retrogenes
retro_nleu_714, retro_nleu_822, retro_nleu_854,
Pongo abelii ENSPPYG00000016655 within_species_paralog 2 retrogenes
retro_pabe_2425, retro_pabe_415,
Pan troglodytes ENSPTRG00000006736 possible_ortholog 2 retrogenes
retro_ptro_207, retro_ptro_596,
Rattus norvegicus ENSRNOG00000007219 possible_ortholog 1 retrogene
retro_rnor_860,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_1760 80.79 61.14
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Download FASTA sequences of all ENSPPYG00000006153 retrocopies