Parental gene:

Hsp90aa1, ENSMUSG00000021270

Aliases:Hsp90aa1, 86kDa, 89kDa, AL024080, AL024147, Hsp86-1, Hsp89, Hsp90, Hspca, hsp4
Description:heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
Organism:Mouse (Mus musculus)
Coordinates:12:110690604..110702728(-)


>ENSMUSG00000021270
ATGCCTGAGGAAACCCAGACCCAAGACCAACCAATGGAGGAGGAGGAGGTCGAGACCTTTGCCTTTCAGGCAGAAATTGC
CCAGTTAATGTCCTTGATCATCAATACCTTCTACTCGAACAAAGAGATCTTTCTGAGGGAGCTCATCTCCAATTCATCGG
ACGCTCTGGATAAAATCCGTTACGAGAGCCTGACGGACCCCAGTAAACTGGACTCGGGGAAGGAGCTGCACATCAATCTC
ATTCCCAGCAAACAGGACCGAACCCTGACCATTGTGGATACCGGGATTGGAATGACCAAGGCCGACTTGATCAATAACCT
TGGCACCATTGCCAAGTCGGGCACCAAAGCCTTCATGGAGGCTTTGCAGGCTGGTGCAGATATCTCTATGATTGGCCAGT
TTGGTGTTGGTTTTTACTCTGCCTATTTGGTTGCTGAGAAAGTGACTGTCATCACGAAGCATAACGACGATGAGCAGTAT
GCCTGGGAGTCCTCAGCTGGGGGATCCTTCACAGTGAGGACTGACACAGGTGAACCAATGGGTCGTGGAACAAAGGTTAT
CTTGCATCTGAAAGAAGACCAAACAGAGTATTTGGAGGAAAGGAGAATAAAGGAGATCGTGAAGAAGCATTCTCAGTTCA
TTGGCTATCCCATTACTCTCTTTGTGGAGAAGGAACGAGATAAGGAAGTCAGTGATGATGAGGCTGAAGAAAAGGAAGAG
AAAGAGGAAGAGAAAGAAAAAGAAGAAAAGGAGTCTGATGATAAACCTGAAATAGAAGATGTTGGCTCTGATGAAGAAGA
GGAGGAGAAGAAGGATGGTGACAAGAAGAAAAAGAAGAAGATAAAGGAAAAGTACATTGATCAAGAAGAACTCAACAAAA
CAAAGCCGATTTGGACGAGAAATCCTGATGACATCACTAATGAGGAATATGGAGAGTTCTACAAGAGCTTAACTAACGAT
TGGGAAGAACACTTGGCAGTAAAGCATTTTTCTGTTGAAGGACAATTAGAATTCCGGGCCCTTCTTTTTGTCCCAAGACG
CGCTCCTTTTGATCTGTTTGAAAACAGAAAGAAAAAGAACAACATCAAGTTGTATGTTCGCAGAGTTTTTATCATGGATA
ACTGTGAGGAATTAATCCCTGAGTATCTGAATTTCATTAGAGGGGTAGTGGATTCTGAGGATCTCCCTCTAAATATTTCC
CGTGAAATGCTGCAACAAAGTAAAATTCTGAAAGTTATCAGAAAGAATTTGGTCAAGAAATGCTTAGAACTATTTACTGA
ACTAGCAGAAGATAAAGAGAACTACAAAAAGTTTTATGAGCAGTTCTCAAAAAATATAAAGCTTGGAATTCACGAGGACT
CTCAGAATCGGAAGAAGCTTTCAGAGCTGTTGCGGTACTACACATCTGCTTCTGGGGACGAGATGGTTTCTCTGAAGGAC
TACTGTACCAGAATGAAGGAAAACCAGAAGCACATCTATTTTATCACAGGTGAGACCAAGGACCAGGTTGCTAACTCCGC
CTTTGTGGAACGTCTCCGAAAGCATGGCTTAGAAGTAATTTATATGATTGAGCCCATTGATGAGTATTGTGTGCAACAGC
TGAAGGAATTTGAGGGCAAGACCTTGGTGTCTGTTACCAAAGAAGGACTGGAACTTCCAGAAGATGAAGAGGAAAAGAAG
AAACAGGAAGAGAAAAAGACAAAATTTGAGAACCTCTGCAAAATTATGAAAGATATTTTGGAGAAGAAGGTTGAAAAGGT
GGTTGTGTCAAACCGACTGGTGACATCCCCGTGCTGTATTGTCACAAGCACATATGGGTGGACAGCAAACATGGAGAGAA
TCATGAAAGCTCAAGCCCTCAGAGACAACTCAACAATGGGTTACATGGCAGCAAAGAAACACCTGGAGATAAATCCTGAT
CACTCCATTATTGAAACCTTAAGGCAAAAGGCAGAGGCTGACAAGAATGACAAATCTGTGAAGGATCTGGTCATCTTGCT
GTATGAAACTGCACTCCTATCTTCTGGCTTCAGTCTGGAAGATCCCCAGACCCATGCTAACAGGATCTACAGGATGATCA
AGCTTGGTCTAGGTATTGATGAGGATGATCCTACTGTGGATGACACCAGTGCTGCTGTAACTGAAGAAATGCCTCCCCTG
GAAGGAGATGACGACACATCACGCATGGAAGAAGTAGACTAA

Library Parental gene expression (RPM)
SRP007412_brain 397 .40 RPM
SRP007412_cerebellum 379 .59 RPM
SRP007412_heart 59 .83 RPM
SRP007412_kidney 233 .75 RPM
SRP007412_liver 143 .56 RPM
SRP007412_testis 686 .95 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000006270 ortholog_one2one 1 retrogene
retro_btau_501,
Callithrix jacchus ENSCJAG00000033945 possible_ortholog 8 retrogenes
retro_cjac_1818, retro_cjac_2300, retro_cjac_2835, retro_cjac_3514, retro_cjac_3596, retro_cjac_3601, retro_cjac_3626, retro_cjac_502,
Cavia porcellus ENSCPOG00000002015 ortholog_one2one 1 retrogene
retro_cpor_1372,
Homo sapiens ENSG00000080824 ortholog_one2one 2 retrogenes
retro_hsap_237, retro_hsap_859,
Monodelphis domestica ENSMODG00000013302 ortholog_one2many 3 retrogenes
retro_mdom_1653, retro_mdom_2010, retro_mdom_817,
Mus musculus ENSMUSG00000023944 within_species_paralog 3 retrogenes
retro_mmus_1916, retro_mmus_3528, retro_mmus_856,
Nomascus leucogenys ENSNLEG00000015925 ortholog_one2one 3 retrogenes
retro_nleu_714, retro_nleu_822, retro_nleu_854,
Pongo abelii ENSPPYG00000006153 possible_ortholog 1 retrogene
retro_pabe_1760,
Pan troglodytes ENSPTRG00000006736 ortholog_one2one 2 retrogenes
retro_ptro_207, retro_ptro_596,
Rattus norvegicus ENSRNOG00000007219 ortholog_one2one 1 retrogene
retro_rnor_860,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_2139 87.85 73.94
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Download FASTA sequences of all ENSMUSG00000021270 retrocopies