Parental gene:

SLIRP, ENSPPYG00000006030

Aliases:None
Description:SRA stem-loop interacting RNA binding protein [Source:HGNC Symbol;Acc:20495]
Organism:Orangutan (Pongo abelii)
Coordinates:14:78901359..78912326(+)


>ENSPPYG00000006030
ATGGCGGCCTCAGCAGCGAGAGGTGCTGCGGCACTGCGTAAAAATATCAATCAGCCGGTTGCTTTTGTGAGAAGAATTCC
TTGGACTGTGGCGTCGAGTCAGCTGAAAGAACACTTTGCACAGTTCGGCCATGTCAGAAGGTGCATGTTACCTTTTGACA
AGGAGACTGGCTTTCACAGAGGTTTGGCTTGGATTCAGTTTTCTTCAGAAGAAGGACTTCAGAATGCCCTACAACGGGAA
AATCATATTATAGATGGAGTAAAGGTCCAGGTTTGCACTCAAAGGCCAAAACTTTTGCAAACATCTGATGATGAAAAGAA
AGATCTTTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 11 .72 RPM
SRP007412_cerebellum 18 .85 RPM
SRP007412_heart 24 .84 RPM
SRP007412_kidney 16 .81 RPM
SRP007412_liver 15 .85 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000003975 ortholog_one2one 3 retrogenes
retro_amel_307, retro_amel_326, retro_amel_340,
Bos taurus ENSBTAG00000008135 ortholog_one2many 3 retrogenes
retro_btau_1439, retro_btau_430, retro_btau_999,
Canis familiaris ENSCAFG00000017230 ortholog_one2one 1 retrogene
retro_cfam_1303,
Callithrix jacchus ENSCJAG00000016946 ortholog_one2one 4 retrogenes
retro_cjac_1116, retro_cjac_1307, retro_cjac_3298, retro_cjac_4132,
Cavia porcellus ENSCPOG00000001500 ortholog_one2one 2 retrogenes
retro_cpor_1388, retro_cpor_579,
Dasypus novemcinctus ENSDNOG00000007721 ortholog_one2one 3 retrogenes
retro_dnov_1721, retro_dnov_2460, retro_dnov_612,
Echinops telfairi ENSETEG00000010345 ortholog_one2one 4 retrogenes
retro_etel_1095, retro_etel_1277, retro_etel_1471, retro_etel_1792,
Felis catus ENSFCAG00000024050 ortholog_one2one 2 retrogenes
retro_fcat_1696, retro_fcat_695,
Homo sapiens ENSG00000119705 ortholog_one2one 1 retrogene
retro_hsap_4769,
Gorilla gorilla ENSGGOG00000011059 ortholog_one2one 1 retrogene
retro_ggor_2972,
Microcebus murinus ENSMICG00000012080 ortholog_one2one 3 retrogenes
retro_mmur_1254, retro_mmur_1504, retro_mmur_238,
Macaca mulatta ENSMMUG00000029256 ortholog_one2one 1 retrogene
retro_mmul_2544,
Mus musculus ENSMUSG00000021040 ortholog_one2one 1 retrogene
retro_mmus_1954,
Pan troglodytes ENSPTRG00000030691 ortholog_one2one 1 retrogene
retro_ptro_3176,
Rattus norvegicus ENSRNOG00000012314 ortholog_one2one 3 retrogenes
retro_rnor_1670, retro_rnor_749, retro_rnor_923,
Sus scrofa ENSSSCG00000028167 ortholog_one2one 5 retrogenes
retro_sscr_344, retro_sscr_345, retro_sscr_383, retro_sscr_384, retro_sscr_820,
Tupaia belangeri ENSTBEG00000013979 ortholog_one2one 2 retrogenes
retro_tbel_1146, retro_tbel_3713,
Vicugna pacos ENSVPAG00000001781 ortholog_one2one 2 retrogenes
retro_vpac_398, retro_vpac_418,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_3712 68.22 97.25
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Download FASTA sequences of all ENSPPYG00000006030 retrocopies