Parental gene:

SLIRP, ENSCJAG00000016946

Aliases:None
Description:SRA stem-loop interacting RNA binding protein [Source:HGNC Symbol;Acc:20495]
Organism:Marmoset (Callithrix jacchus)
Coordinates:10:103103727..103113802(+)


>ENSCJAG00000016946
ATGGCGGCTTTAACAGCGACTGGTGCTGTGGCGCTGCGTAGAAACGTCAGTCGGCCGGTTGCTTTTGTGAGAAAAATTCC
TTGGACCGCGGCGTCGAGTCAGCTGAGAGAACATTTTGCACAGTTTGGCCATATAAAAAGGTGTATTGTACCTTTTGACA
AGGAGACTGGTTTTCACAGAGGTATGGGTTGGGTTCAGTTTTCTTCAGAAGAAGAACTTCAGAATGCACTACAACAGGAA
AATCATATTATAGATGGAGTAAAGCTCCAGGTTCAAGCTCAAAGGCCAAAAATTTTGCAAATACCCGATGAAGAGAAAGA
TTTTTGA

Library Parental gene expression (RPM)
SRP051959_colon 7 .65 RPM
SRP051959_heart 16 .87 RPM
SRP051959_kidney 12 .96 RPM
SRP051959_liver 12 .50 RPM
SRP051959_lung 10 .22 RPM
SRP051959_lymph_node 9 .61 RPM
SRP051959_skeletal_muscle 18 .76 RPM
SRP051959_spleen 9 .75 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000003975 ortholog_one2one 3 retrogenes
retro_amel_307, retro_amel_326, retro_amel_340,
Bos taurus ENSBTAG00000008135 ortholog_one2many 3 retrogenes
retro_btau_1439, retro_btau_430, retro_btau_999,
Canis familiaris ENSCAFG00000017230 ortholog_one2one 1 retrogene
retro_cfam_1303,
Cavia porcellus ENSCPOG00000001500 ortholog_one2one 2 retrogenes
retro_cpor_1388, retro_cpor_579,
Dasypus novemcinctus ENSDNOG00000007721 ortholog_one2one 3 retrogenes
retro_dnov_1721, retro_dnov_2460, retro_dnov_612,
Echinops telfairi ENSETEG00000010345 ortholog_one2one 4 retrogenes
retro_etel_1095, retro_etel_1277, retro_etel_1471, retro_etel_1792,
Felis catus ENSFCAG00000024050 ortholog_one2one 2 retrogenes
retro_fcat_1696, retro_fcat_695,
Homo sapiens ENSG00000119705 ortholog_one2one 1 retrogene
retro_hsap_4769,
Gorilla gorilla ENSGGOG00000011059 ortholog_one2one 1 retrogene
retro_ggor_2972,
Microcebus murinus ENSMICG00000012080 ortholog_one2one 3 retrogenes
retro_mmur_1254, retro_mmur_1504, retro_mmur_238,
Macaca mulatta ENSMMUG00000029256 ortholog_one2one 1 retrogene
retro_mmul_2544,
Mus musculus ENSMUSG00000021040 ortholog_one2one 1 retrogene
retro_mmus_1954,
Pongo abelii ENSPPYG00000006030 ortholog_one2one 1 retrogene
retro_pabe_3712,
Pan troglodytes ENSPTRG00000030691 ortholog_one2one 1 retrogene
retro_ptro_3176,
Rattus norvegicus ENSRNOG00000012314 ortholog_one2one 3 retrogenes
retro_rnor_1670, retro_rnor_749, retro_rnor_923,
Sus scrofa ENSSSCG00000028167 ortholog_one2one 5 retrogenes
retro_sscr_344, retro_sscr_345, retro_sscr_383, retro_sscr_384, retro_sscr_820,
Tupaia belangeri ENSTBEG00000013979 ortholog_one2one 2 retrogenes
retro_tbel_1146, retro_tbel_3713,
Vicugna pacos ENSVPAG00000001781 ortholog_one2one 2 retrogenes
retro_vpac_398, retro_vpac_418,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1116 71.30 100.00
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2. retro_cjac_1307 62.50 66.67
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3. retro_cjac_3298 77.06 100.00
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4. retro_cjac_4132 80.28 64.81
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Download FASTA sequences of all ENSCJAG00000016946 retrocopies