Parental gene: | PCNP, ENSOCUG00000011110 |
| Aliases: | None |
| Description: | PEST proteolytic signal containing nuclear protein [Source:HGNC Symbol;Acc:30023] |
| Organism: | Rabbit (Oryctolagus cuniculus) |
| Coordinates: | 14:118902132..118919201(-) |
>ENSOCUG00000011110
ATGGGAGCCTCTTCTACTGCCACACAATCTCAGTTCCTGCTGTATACTCTAACAAACAGTGAAGAGACTGTTGGGTCAGT
AGGTGACAACTGCAGAGGACCTGAAGAAGAAGCAGAAAAACCTGTGAAAACTAAGACTGTTTCTTCCAGTAATGGAGGGG
AAAGTTCCAGTCGCAGCGCTGAGAAACGATCAGCTGAAGAAGAAGCTGCAGACCTCCCAACAAAACCTACAAAGATCTCC
AAGTTTGGATTTGCCATAGGTAGTCAGACGTCAAAGAAAGCATCAGCCATATCCATCAAACTTGGATCAAGTAAGCCTAA
AGAAACTGTTCCAACTCTTGCTCCAAAAACTCTTTCAGTAGCAGCGGCTTTTAATGAAGATGAAGATAGTGAACCAGAGG
AAATGCCTCCAGAAGCAAAGATGAGGATGAAGAATATTGGAAGGGATACACCAACATCAGCCGGACCAAATTCCTTCAAT
AAAGGAAAGCATGGGTTTTCTGATAACCAGAAGCTATGGGAGAGAAATATAAAATCTCATCTTGGAAATGTCCATGACCA
AGACAAT
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_brain | 18 .16 RPM |
| SRP017611_kidney | 15 .51 RPM |
| SRP017611_liver | 7 .01 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000003777 | possible_ortholog | 2 retrogenes | |
| Canis familiaris | ENSCAFG00000009593 | possible_ortholog | 3 retrogenes | |
| Choloepus hoffmanni | ENSCHOG00000007972 | ortholog_one2many | 11 retrogenes | |
| Callithrix jacchus | ENSCJAG00000000508 | possible_ortholog | 6 retrogenes | |
| Dasypus novemcinctus | ENSDNOG00000008873 | ortholog_one2many | 5 retrogenes | |
| Felis catus | ENSFCAG00000029026 | possible_ortholog | 2 retrogenes | |
| Homo sapiens | ENSG00000081154 | ortholog_one2one | 3 retrogenes | |
| Gorilla gorilla | ENSGGOG00000025423 | ortholog_one2one | 4 retrogenes | |
| Loxodonta africana | ENSLAFG00000005518 | ortholog_one2many | 2 retrogenes | |
| Microcebus murinus | ENSMICG00000008072 | ortholog_one2one | 10 retrogenes | |
| Myotis lucifugus | ENSMLUG00000005878 | possible_ortholog | 5 retrogenes | |
| Macaca mulatta | ENSMMUG00000017782 | ortholog_one2one | 3 retrogenes | |
| Mustela putorius furo | ENSMPUG00000011696 | possible_ortholog | 1 retrogene | |
| Mus musculus | ENSMUSG00000071533 | ortholog_one2one | 4 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000003224 | ortholog_one2one | 2 retrogenes | |
| Procavia capensis | ENSPCAG00000007007 | ortholog_one2many | 3 retrogenes | |
| Pongo abelii | ENSPPYG00000013591 | ortholog_one2one | 5 retrogenes | |
| Pan troglodytes | ENSPTRG00000015172 | ortholog_one2one | 3 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000009886 | possible_ortholog | 2 retrogenes | |
| Rattus norvegicus | ENSRNOG00000028411 | ortholog_one2one | 1 retrogene | |
| Sorex araneus | ENSSARG00000001433 | possible_ortholog | 2 retrogenes | |
| Sus scrofa | ENSSSCG00000011955 | possible_ortholog | 5 retrogenes | |
| Tursiops truncatus | ENSTTRG00000015008 | possible_ortholog | 1 retrogene | |
| Vicugna pacos | ENSVPAG00000012239 | possible_ortholog | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ocun_573 | 61.54 | 75.13 | Please wait, loading  |
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| 2. | retro_ocun_687 | 60.17 | 61.38 | Please wait, loading |
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| 3. | retro_ocun_868 | 78.79 | 52.38 | Please wait, loading |
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| 4. | retro_ocun_1072 | 79.63 | 90.45 | Please wait, loading |
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| 5. | retro_ocun_1144 | 75.52 | 79.78 | Please wait, loading |
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| 6. | retro_ocun_1496 | 73.21 | 61.80 | Please wait, loading |
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| 7. | retro_ocun_1537 | 56.67 | 66.29 | Please wait, loading |
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Download FASTA sequences of all ENSOCUG00000011110 retrocopies