Parental gene:

PCNP, ENSPPYG00000013591

Aliases:None
Description:PEST proteolytic signal-containing nuclear protein [Source:UniProtKB/Swiss-Prot;Acc:Q5RCI9]
Organism:Orangutan (Pongo abelii)
Coordinates:3:31538538..31559343(-)


>ENSPPYG00000013591
ATGGTTGTTGGGCGGGGTCGTGACGTCCTTGGCGTGGCTGCAGGGGAGGCCGCGGCGGGGAAAATGGCGGACGGGAAGGC
GGGAGAGGAGAAGCCTGAAAAGTCGCAGCGAGCTGGAGCCGCCGGAGGACCTGAAGAAGAAGCAGAAAAACCTGTGAAAA
CTAAGACTGTTTCTTCCAGTAATGGAGGGGAAAGTTCCAGTCGCAGCGCTGAGAAGCGATCAGCTGAAGAAGAAGCTGTC
GACCTCCCAACAAAGCCTACAAAGATCTCCAAGTTTGGATTTGCCATAGGTAGTCAGACGACAAAGAAAGCATCAGCCAT
ATCCATCAAACTTGGATCAAGTAAGCCTAAAGAAACTGTTCCAACTCTTGCTCCAAAAACTCTTTCAGTAGCAGCAGCTT
TTAATGAAGATGAAGATAGTGAACCAGAGGAAATGCCTCCAGAAGCAAAGATGAGGATGAAGAATATTGGAAGGGATACA
CCAACATCAGCTGGACCAAACTCCTTCAATAAAGGAAAGCATGGGTTTTCTGATAACCAGAAGCTGTGGGAGCGAAATAT
AAAATCTCATCTTGGAAATGTCCATGACCAAGACAATTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 53 .69 RPM
SRP007412_cerebellum 67 .61 RPM
SRP007412_heart 34 .05 RPM
SRP007412_kidney 40 .44 RPM
SRP007412_liver 25 .40 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000007972 ortholog_one2one 11 retrogenes
retro_chof_1170, retro_chof_1215, retro_chof_2070, retro_chof_2280, retro_chof_2290, retro_chof_2553, retro_chof_2575, retro_chof_594, retro_chof_651, retro_chof_806, retro_chof_819,
Callithrix jacchus ENSCJAG00000000508 possible_ortholog 6 retrogenes
retro_cjac_101, retro_cjac_1569, retro_cjac_1722, retro_cjac_3205, retro_cjac_3332, retro_cjac_401,
Dasypus novemcinctus ENSDNOG00000008873 ortholog_one2one 5 retrogenes
retro_dnov_1606, retro_dnov_259, retro_dnov_370, retro_dnov_910, retro_dnov_98,
Homo sapiens ENSG00000081154 ortholog_one2one 3 retrogenes
retro_hsap_1130, retro_hsap_1155, retro_hsap_1264,
Gorilla gorilla ENSGGOG00000025423 ortholog_one2one 4 retrogenes
retro_ggor_882, retro_ggor_901, retro_ggor_902, retro_ggor_994,
Loxodonta africana ENSLAFG00000005518 ortholog_one2one 2 retrogenes
retro_lafr_1189, retro_lafr_458,
Microcebus murinus ENSMICG00000008072 ortholog_one2one 10 retrogenes
retro_mmur_1010, retro_mmur_1138, retro_mmur_1286, retro_mmur_148, retro_mmur_1535, retro_mmur_1547, retro_mmur_1625, retro_mmur_167, retro_mmur_458, retro_mmur_887,
Macaca mulatta ENSMMUG00000017782 ortholog_one2one 3 retrogenes
retro_mmul_1312, retro_mmul_1377, retro_mmul_2598,
Mustela putorius furo ENSMPUG00000011696 possible_ortholog 1 retrogene
retro_mputfur_850,
Mus musculus ENSMUSG00000071533 ortholog_one2one 4 retrogenes
retro_mmus_2331, retro_mmus_2339, retro_mmus_2822, retro_mmus_3034,
Nomascus leucogenys ENSNLEG00000003224 ortholog_one2one 2 retrogenes
retro_nleu_2100, retro_nleu_2971,
Oryctolagus cuniculus ENSOCUG00000011110 ortholog_one2one 7 retrogenes
retro_ocun_1072, retro_ocun_1144, retro_ocun_1496, retro_ocun_1537, retro_ocun_573, retro_ocun_687, retro_ocun_868,
Procavia capensis ENSPCAG00000007007 ortholog_one2one 3 retrogenes
retro_pcap_161, retro_pcap_194, retro_pcap_273,
Pan troglodytes ENSPTRG00000015172 ortholog_one2one 3 retrogenes
retro_ptro_676, retro_ptro_790, retro_ptro_864,
Rattus norvegicus ENSRNOG00000028411 ortholog_one2one 1 retrogene
retro_rnor_2138,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_935 82.44 64.32
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2. retro_pabe_961 83.33 86.43
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3. retro_pabe_1051 84.62 70.35
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4. retro_pabe_1598 91.80 61.31
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5. retro_pabe_3778 73.77 91.46
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Download FASTA sequences of all ENSPPYG00000013591 retrocopies