Parental gene:

ENSOCUG00000003891

Aliases:None
Description:None
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:6:12718087..12751332(+)


>ENSOCUG00000003891
ATGAAGCTATTAACCAGAGCCGGGTCCTTTTCGAGATTTTATTCCCTCAAAGTTGCTCCCAAAGTGAAAGCCTCGGCTGC
CCCCGCAGGAGCGCCTCTGCACCCTCAGGACCTCGAGTTCACCAAATTACCAAATGGCTTAGTGATTGCTTCTCTGGAAA
ACTATGCTCCTGCATCCAGAATTGGCTTGTTCATCAAAGCGGGCAGTAGATACGAGGACTCCAACAACTTAGGGACCTCT
CATTTGCTGCGTCTTGCATCCAGTTTGACGACTAAAGGAGCTTCCTCGTTCAAGATAACCCGTGGGATTGAAGCAGTTGG
TGGTACACTAAGTGTGACTGCAACAAGGGAAAAGATGGCATACACGGTGGAATGCCTGCGGGACGATGTTGATATTCTAA
TGGAGTTCCTACTCAACGTCACCACATCACCAGAATTTCGTCGCTGGGAAGTAGCTGCACTTCAGTCTCAGCTAAGGGTT
GACAAAGCTGTGGCTTTTCAGAATCCACAGACGCATGTCATTGAAAATTTGCATGCTGCAGCCTACCGGAATGCCTTGGC
TAATTCCTTGTATTGTCCTGACTATAGGATTGGAAAAGTGACACCAGAAGAGTTACATTACTATGTTCAGAACCACTTCA
CAAGTGCAAGAATGGCTTTGATTGGACTTGGTGTGAGTCATCCTGTCCTCAAGCAAGTTGCTGAGCAATTCCTCAACATG
AGGGGTGGGCTTGGCTTGGCTGGTGTAAAGGCCAGATACCGTGGAGGTGAAATCCGAGAACAGACTGGAGACAGCCTTGT
CCATGCTGCGGTTGTAGCAGAAAGCGCTGCCATGGGAAGCGCAGAAGCGAATGCATTTAGTGTCCTTCAGCATGTCCTTG
GTGCCGGGCCCCACGTCAAAAGGGGCAGCAACGCCACCAGCCTCCTATACCAGGCTGTCGCCAAGGGGACTCACCAGCCA
TTCGATGTTTCTGCTTTTAATGCCAGTTACACGGATTCTGGACTCTTCGGGATTTACACTATCTCCCAGGCGGCAGCTGC
TGGAGATGTTATCAAGGCTGCCTACAACCAAGTAAAAACAGTTGCTCAAGGAAACCTTTCCAGTGCAGATGTCCAAGCTG
CCAAGAACAAGCTGAAAGCTGGATATCTAATGTCAGTAGAGTCTTCAGAGGGTTTCCTGGATGAGGTTGGGTCCCAGGCT
CTGATTGCTGGTTCTTACGTGCCACCATCCACAGTCCTTCAGCAGATTGACTCGGTGGCTGATGCTGATATCGTAAATGC
TGCAAAGAAGTTTGTTTCTGGCCAGAAGTCCATGGCAGCAAGTGGAAATTTGGGTCATACACCTTTTGTTGATGAGTTAT
AA

Library Parental gene expression (RPM)
SRP017611_brain 157 .45 RPM
SRP017611_kidney 222 .27 RPM
SRP017611_liver 65 .82 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000021651 ortholog_one2many 2 retrogenes
retro_btau_1008, retro_btau_1668,
Canis familiaris ENSCAFG00000017756 ortholog_one2many 1 retrogene
retro_cfam_2075,
Callithrix jacchus ENSCJAG00000009116 ortholog_many2many 1 retrogene
retro_cjac_222,
Echinops telfairi ENSETEG00000001084 ortholog_one2many 1 retrogene
retro_etel_2087,
Homo sapiens ENSG00000140740 ortholog_one2many 1 retrogene
retro_hsap_2785,
Gorilla gorilla ENSGGOG00000015379 ortholog_one2many 1 retrogene
retro_ggor_1941,
Myotis lucifugus ENSMLUG00000003345 ortholog_many2many 2 retrogenes
retro_mluc_1391, retro_mluc_770,
Macaca mulatta ENSMMUG00000018287 ortholog_one2many 2 retrogenes
retro_mmul_1442, retro_mmul_683,
Monodelphis domestica ENSMODG00000007645 ortholog_one2many 1 retrogene
retro_mdom_327,
Mustela putorius furo ENSMPUG00000016849 ortholog_many2many 1 retrogene
retro_mputfur_1042,
Nomascus leucogenys ENSNLEG00000012185 ortholog_one2many 1 retrogene
retro_nleu_685,
Otolemur garnettii ENSOGAG00000005478 ortholog_many2many 4 retrogenes
retro_ogar_1113, retro_ogar_112, retro_ogar_1934, retro_ogar_82,
Ochotona princeps ENSOPRG00000000419 ortholog_one2many 1 retrogene
retro_opri_455,
Pongo abelii ENSPPYG00000007174 ortholog_one2many 1 retrogene
retro_pabe_2232,
Pan troglodytes ENSPTRG00000007871 ortholog_one2many 1 retrogene
retro_ptro_1886,
Sorex araneus ENSSARG00000010670 ortholog_one2many 1 retrogene
retro_sara_231,
Tupaia belangeri ENSTBEG00000010785 ortholog_one2many 1 retrogene
retro_tbel_3988,
Vicugna pacos ENSVPAG00000010914 ortholog_one2many 1 retrogene
retro_vpac_640,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_604 95.36 100.00
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2. retro_ocun_739 78.35 50.99
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Download FASTA sequences of all ENSOCUG00000003891 retrocopies