Parental gene:

Snrpn, ENSMUSG00000000948

Aliases:Snrpn, 2410045I01Rik, HCERN3, Peg4, Pwcr1, SMN
Description:small nuclear ribonucleoprotein N [Source:MGI Symbol;Acc:MGI:98347]
Organism:Mouse (Mus musculus)
Coordinates:7:59982494..60140219(-)


>ENSMUSG00000000948
ATGACTGTGGGTAAGAGTAGCAAGATGCTGCAGCACATTGACTATAGGATGAGATGTATCCTGCAAGATGGGAGAATCTT
CATTGGCACCTTCAAGGCTTTTGACAAGCATATGAATTTGATCCTCTGTGATTGTGATGAGTTCAGGAAGATCAAGCCAA
AGAATGCAAAACAGCCAGAACGTGAAGAAAAACGGGTTTTGGGTCTGGTCTTGCTACGTGGGGAGAACTTGGTTTCAATG
ACTGTGGAGGGCCCACCTCCTAAAGATACTGGCATTGCTCGTGTGCCTCTTGCTGGCGCTGCAGGTGGCCCTGGGGTTGG
AAGAGCAGCTGGCAGAGGAGTGCCAGCAGGTGTACCTATTCCCCAGGCTCCTGCTGGATTAGCAGGCCCTGTCAGAGGAG
TTGGAGGCCCATCCCAGCAGGTCATGACCCCACAGGGAAGAGGCACTGTTGCAGCTGCTGCTGTTGCTGCTACTGCTAGC
ATTGCAGGAGCCCCAACCCAGTACCCGCCAGGACGGGGAACTCCACCTCCACCTGTAGGCAGAGCAACCCCACCTCCAGG
CATTATGGCTCCTCCACCTGGTATGAGACCACCCATGGGCCCACCCATTGGGCTTCCCCCTGCTCGTGGGACACCTATAG
GCATGCCTCCTCCAGGAATGAGACCCCCTCCACCAGGAATTAGAGGCCCACCTCCCCCAGGAATGCGCCCACCAAGACCC
TAA

Library Parental gene expression (RPM)
SRP007412_brain 414 .67 RPM
SRP007412_cerebellum 294 .40 RPM
SRP007412_heart 33 .18 RPM
SRP007412_kidney 14 .75 RPM
SRP007412_liver 6 .06 RPM
SRP007412_testis 9 .01 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000007034 ortholog_one2one 3 retrogenes
retro_amel_1048, retro_amel_714, retro_amel_839,
Bos taurus ENSBTAG00000008251 ortholog_one2one 1 retrogene
retro_btau_620,
Canis familiaris ENSCAFG00000010127 ortholog_one2many 6 retrogenes
retro_cfam_1753, retro_cfam_1874, retro_cfam_2039, retro_cfam_627, retro_cfam_682, retro_cfam_752,
Choloepus hoffmanni ENSCHOG00000001846 ortholog_one2one 2 retrogenes
retro_chof_2275, retro_chof_385,
Cavia porcellus ENSCPOG00000020270 ortholog_one2one 1 retrogene
retro_cpor_878,
Felis catus ENSFCAG00000022298 ortholog_one2one 2 retrogenes
retro_fcat_1390, retro_fcat_1895,
Homo sapiens ENSG00000128739 ortholog_one2one 1 retrogene
retro_hsap_2580,
Gorilla gorilla ENSGGOG00000003988 ortholog_one2one 1 retrogene
retro_ggor_1615,
Loxodonta africana ENSLAFG00000009458 ortholog_one2one 1 retrogene
retro_lafr_1012,
Myotis lucifugus ENSMLUG00000023361 ortholog_one2many 3 retrogenes
retro_mluc_1192, retro_mluc_1816, retro_mluc_2156,
Macaca mulatta ENSMMUG00000023139 ortholog_one2one 1 retrogene
retro_mmul_644,
Mustela putorius furo ENSMPUG00000014638 ortholog_one2many 1 retrogene
retro_mputfur_1080,
Mus musculus ENSMUSG00000027404 within_species_paralog 3 retrogenes
retro_mmus_2938, retro_mmus_3450, retro_mmus_554,
Oryctolagus cuniculus ENSOCUG00000003532 ortholog_one2one 4 retrogenes
retro_ocun_1291, retro_ocun_488, retro_ocun_689, retro_ocun_846,
Otolemur garnettii ENSOGAG00000007392 ortholog_one2one 5 retrogenes
retro_ogar_1179, retro_ogar_3042, retro_ogar_3060, retro_ogar_475, retro_ogar_722,
Pongo abelii ENSPPYG00000006269 ortholog_one2one 1 retrogene
retro_pabe_1900,
Pan troglodytes ENSPTRG00000006826 ortholog_one2one 1 retrogene
retro_ptro_1507,
Rattus norvegicus ENSRNOG00000015976 ortholog_one2one 6 retrogenes
retro_rnor_1122, retro_rnor_1314, retro_rnor_1485, retro_rnor_2161, retro_rnor_2462, retro_rnor_2517,
Sus scrofa ENSSSCG00000028124 ortholog_one2one 2 retrogenes
retro_sscr_350, retro_sscr_405,
Ictidomys tridecemlineatus ENSSTOG00000001339 ortholog_one2one 1 retrogene
retro_itri_44,
Tursiops truncatus ENSTTRG00000010966 ortholog_one2one 5 retrogenes
retro_ttru_1005, retro_ttru_1051, retro_ttru_1473, retro_ttru_580, retro_ttru_600,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_665 77.24 60.00
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2. retro_mmus_1285 79.69 53.33
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3. retro_mmus_1733 54.61 56.67
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Download FASTA sequences of all ENSMUSG00000000948 retrocopies