Parental gene:

RPS26, ENSMMUG00000017042

Aliases:None
Description:40S ribosomal protein S26 [Source:RefSeq peptide;Acc:NP_001180510]
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:11:53094952..53097162(+)


>ENSMMUG00000017042
ATGACAAAGAAAAGAAGGAACAACGGTCGTGCCAAAAAGGGCCGCGGCCATGTGCAGCCTATTCGCTGCACTAACTGTGC
CCGATGCGTGCCCAAGGACAAGGCCATTAAGAAATTCGTCATTCGAAACATAGTGGAGGCCGCAGCGGTCAGGGACATTT
CTGAAGCGAGCGTCTTTGATGCCTATGTGCTTCCCAAGCTGTATGTGAAGCTGCATTACTGTGTGAGTTGTGCAATTCAC
AGCAAAGTAGTCAGGAATCGATCTCGTGAAGCCCGCAAGGACCGAACACCCCCTCCCCGATTTAGACCTGCGGGTGCTGC
CCCACGTCCCCCACCAAAGCCCATGTAA

Library Parental gene expression (RPM)
SRP007412_brain 14 .01 RPM
SRP007412_brain_prefrontal_cortex 105 .51 RPM
SRP007412_cerebellum 16 .08 RPM
SRP007412_heart 46 .93 RPM
SRP007412_kidney 32 .75 RPM
SRP007412_liver 115 .55 RPM
SRP007412_testis 31 .74 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000003260 possible_ortholog 7 retrogenes
retro_amel_1037, retro_amel_1240, retro_amel_303, retro_amel_777, retro_amel_926, retro_amel_927, retro_amel_928,
Bos taurus ENSBTAG00000038896 possible_ortholog 3 retrogenes
retro_btau_191, retro_btau_25, retro_btau_724,
Cavia porcellus ENSCPOG00000023630 possible_ortholog 6 retrogenes
retro_cpor_115, retro_cpor_1231, retro_cpor_134, retro_cpor_173, retro_cpor_48, retro_cpor_992,
Dipodomys ordii ENSDORG00000001151 possible_ortholog 2 retrogenes
retro_dord_239, retro_dord_279,
Echinops telfairi ENSETEG00000004510 possible_ortholog 35 retrogenes
retro_etel_1072, retro_etel_1145, retro_etel_1149, retro_etel_1175, retro_etel_1321, retro_etel_1357, retro_etel_1407, retro_etel_1423, retro_etel_1469, retro_etel_1498, retro_etel_155, retro_etel_162, retro_etel_1647, retro_etel_1691, retro_etel_1703, retro_etel_1734, retro_etel_1801, retro_etel_181, retro_etel_1859, retro_etel_1913, retro_etel_1963, retro_etel_2006, retro_etel_2043, retro_etel_2138, retro_etel_2146, retro_etel_2175, retro_etel_269, retro_etel_354, retro_etel_38, retro_etel_424, retro_etel_462, retro_etel_741, retro_etel_77, retro_etel_894, retro_etel_898,
Felis catus ENSFCAG00000013977 ortholog_one2one 10 retrogenes
retro_fcat_1211, retro_fcat_1332, retro_fcat_1460, retro_fcat_1728, retro_fcat_1851, retro_fcat_1948, retro_fcat_1949, retro_fcat_428, retro_fcat_508, retro_fcat_949,
Gorilla gorilla ENSGGOG00000011566 possible_ortholog 6 retrogenes
retro_ggor_106, retro_ggor_121, retro_ggor_19, retro_ggor_55, retro_ggor_56, retro_ggor_63,
Loxodonta africana ENSLAFG00000013329 possible_ortholog 8 retrogenes
retro_lafr_180, retro_lafr_240, retro_lafr_40, retro_lafr_464, retro_lafr_513, retro_lafr_768, retro_lafr_835, retro_lafr_962,
Myotis lucifugus ENSMLUG00000029968 possible_ortholog 10 retrogenes
retro_mluc_1153, retro_mluc_149, retro_mluc_1925, retro_mluc_2065, retro_mluc_2163, retro_mluc_2462, retro_mluc_266, retro_mluc_309, retro_mluc_332, retro_mluc_477,
Mus musculus ENSMUSG00000025362 ortholog_one2one 1 retrogene
retro_mmus_115,
Pan troglodytes ENSPTRG00000005075 possible_ortholog 1 retrogene
retro_ptro_74,
Sus scrofa ENSSSCG00000000374 possible_ortholog 2 retrogenes
retro_sscr_406, retro_sscr_650,
Ictidomys tridecemlineatus ENSSTOG00000010559 possible_ortholog 12 retrogenes
retro_itri_1300, retro_itri_1446, retro_itri_1477, retro_itri_1488, retro_itri_289, retro_itri_418, retro_itri_469, retro_itri_470, retro_itri_643, retro_itri_652, retro_itri_729, retro_itri_871,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_294 99.12 99.13
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2. retro_mmul_646 59.49 68.70
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3. retro_mmul_1009 77.92 66.96
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4. retro_mmul_1017 68.38 100.00
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5. retro_mmul_1676 79.22 66.96
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6. retro_mmul_1944 72.15 66.96
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7. retro_mmul_2092 65.45 94.78
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Download FASTA sequences of all ENSMMUG00000017042 retrocopies