Parental gene:

sfpq, ENSGACG00000002034

Aliases:None
Description:splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated) [Source:ZFIN;Acc:ZDB-GENE-040426-2452]
Organism:Stickleback (Gasterosteus aculeatus)
Coordinates:groupX:1487399..1504988(-)


>ENSGACG00000002034
ATGTCTCGATTCAACAATAATCGCGGTGGCCTCGGAATGAATAATTTCCAGCAACGCAGAGGGGGCATTGGGCCCGGCGG
GCCGATGCGGGGTGGTCTAATGGGAAACCCCAATTTCAGGAGCCATCCTTTCCACAATCAGAACCAAATTCGAAGGGGAC
AGAACAACAACTTCAACAGACCGCTTAATCAAGGACCACAGACTCCCCAGAAGCCACAACCTAACCAGTCGCTTATCCCT
CCACCAAGTCCTGGTCCGGCTCTCACCATGAAAGGCCCGATGCAGCAACAGCAGGAGAAACCGACAACTGTCCCAGAACA
GCCGCAGCCGAAACCGACAACCCCTACGCCTCAACCAAAGATCCAGTCTCCCCCTCCAAAAGCCACCGTGGCCTCCCCCC
CACCTAACCAGCCGATTAAGGAGCAGAACCTTCCGCTGAAATCCCCGGTAGGAAATACTAACGGGCAGAAGCCGCCTCCA
CAACCAAGCCCCAAGTCGGTTCCCCAACAAGGCCCAAAGCCAGGCCCTCACCAAGGCCAGAAGACTGGGCCACACCAGGG
AGTGAGGGGAAACCCTTATCACGGACAGCGAATGGGGCCATCACCAATGAGGCCTAGACAGGAGCCAGATAAGATCACCA
CAAAGAATGAAACACCGGCGTCAGATGGGAGCCAGGATAAGCAGGCGTTCAAGGCGACGCTCTCCATGCTTCTGAAACCC
GGCGAGAAGACTTACACCCAGCGGTGTCGTCTGTTCATCGGAAACCTGCCCAACGACATCACCGAGGAGGATTTCAAGAA
GCTTTTCGCCAAATATGGAGAACCCAGCGAGGTCTTCATCAACAAGAGCAAAGGCTTTGGTTTCATCCGACTGGAGTCCC
GTGCACTTGCAGAGATTGCAAAAGCAGAGTTGGACGACACACCAATGAAAAGCCGACCCCTGCGGGTCCGGTTTGCCACG
CACTCCGCTGCGCTGTCTGTGAAGAATCTGTCACCCTTTGTGTCCAACGAGCTCCTGGAAGAAGCGTTTGCTCAGTTCGG
AATGGTCGAGAGATCCATCGTCATCGTAGACGATCGTGGCCGCTCCACGGGCAGAGGCATCGTGGAGTTTGCATCCAAAC
CTGCAGCCAGAAAAGCCCTGGATCGGTGCAACGAGGGTGTCTTCCTGCTCACCACGTCACCCCGACCAGTTGTTGTCGAG
CCCCTGGAGCAGTTTGATGACGAAGATGGACTTCCAGAAAAGCTCGCACAGAAGAACCCCAGATATCAAGCAGAGCGCGA
GGAACCGCCTCGCTTTGCTCGTCCTGGCACTTTCGAATACGAGTACTCCAAGCGCTGGAAGTCCCTGGATGACATGGAAA
AGCAGCAGAGACAGCAAGTGGAGAAGAACATGCGCGAAGCCCGCGAGAAGCTGGAGAGCGAGATGGAGGACGCGTTCCAC
GAGCACCAGGCCAACCTACTCCGACAAGATCTGCTGAGGAGACAAGAGGAACTGCGACGCATGGAGGAGGTGCACAGTCA
GGAGATGCAGAAGAGAAAGGAGATGCAGATTAGACAAGAGGAAGAGCGCCGGCGACGAGAAGAGGAGATGATTCGCAAGA
GGGACATGGAGGAGCAGATGCGCCGCCAGCGTGAAGAGAACTACAGGATGGGAAACTACATGGATAGGGACCGAGAGATG
AGAATGAATCCCGGTGGCGCTTTGGGCATCGATATGCCCTTTGGTGGAGCCAACCAGAAGTTCCCCATGGGCGGACTGGG
TTTTGAGGGTCAGAAGGGAATGGGACCAGCCGCAGGAGGCCTTATGGGCAACGAAATGCGCAACGAGCGCTTTGCCCAGG
GCGGTCCTAGGGGGATGGGTCCTGGTAACCCCGGGTTCGGCAGGGTCCGCGAGGAGTTTGATGGACCTGCTAAGAAACCG
CGCTTTTAA

Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000003595 ortholog_one2many 1 retrogene
retro_cfam_198,
Callithrix jacchus ENSCJAG00000001431 ortholog_one2many 4 retrogenes
retro_cjac_1073, retro_cjac_2542, retro_cjac_2697, retro_cjac_486,
Felis catus ENSFCAG00000031287 ortholog_one2one 1 retrogene
retro_fcat_1989,
Gadus morhua ENSGMOG00000011950 ortholog_one2many 1 retrogene
retro_gmor_20,
Macropus eugenii ENSMEUG00000014082 ortholog_one2one 1 retrogene
retro_meug_164,
Oryctolagus cuniculus ENSOCUG00000001877 ortholog_one2one 1 retrogene
retro_ocun_1834,
Oreochromis niloticus ENSONIG00000017737 ortholog_one2one 1 retrogene
retro_onil_21,
Sarcophilus harrisii ENSSHAG00000016107 ortholog_one2many 1 retrogene
retro_shar_36,
Tetraodon nigroviridis ENSTNIG00000011331 ortholog_one2one 1 retrogene
retro_tnig_32,
Takifugu rubripes ENSTRUG00000003783 ortholog_one2one 1 retrogene
retro_trub_8,
Drosophila melanogaster FBgn0004227 ortholog_many2many 1 retrogene
retro_dmel_11,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_gacu_13 61.02 60.39
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Download FASTA sequences of all ENSGACG00000002034 retrocopies