Parental gene:

ENSFCAG00000030424

Aliases:None
Description:None
Organism:Cat (Felis catus)
Coordinates:E1:57362808..57365971(-)


>ENSFCAG00000030424
ATGGCCCGAACCAAGCAGACGGCTCGTAAATCTACGGGTGGGAAAGCGCCCCGTAAGCAGCTGGCCACTAAAGCCGCCAG
GAAAAGTGCTCCCTCTACTGGCGGGGTGAAAAAACCTCATCGCTACAGGCCCGGGACCGTTGCGCTTCGAGAGATCCGTC
GTTACCAGAAATCGACCGAGCTTCTGATCCGGAAGCTGCCTTTCCAGAGGTTGGTGAGGGAGATCGCCCAGGATTTCAAA
ACCGATCTGAGGTTTCAGAGTGCCGCCATTGGTGCGCTGCAGGAGGCCAGTGAAGCGTACCTGGTGGGTTTATTTGAAGA
TACTAATCTGTGTGCCATCCACGCTAAGAGAGTCACCATCATGCCCAAAGACATCCAGTTGGCTCGCCGGATACGGGGAG
AGAGAGCTTAA

Library Parental gene expression (RPM)
SRP017611_brain 170 .44 RPM
SRP017611_kidney 229 .61 RPM
SRP017611_liver 83 .70 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000014588 possible_ortholog 7 retrogenes
Bos taurus ENSBTAG00000024561 possible_ortholog 3 retrogenes
Canis familiaris ENSCAFG00000004916 possible_ortholog 2 retrogenes
Canis familiaris ENSCAFG00000016119 possible_ortholog 4 retrogenes
Dipodomys ordii ENSDORG00000008132 possible_ortholog 9 retrogenes
Erinaceus europaeus ENSEEUG00000013796 possible_ortholog 1 retrogene
Felis catus ENSFCAG00000003617 within_species_paralog 4 retrogenes
Homo sapiens ENSG00000163041 possible_ortholog 5 retrogenes
Gorilla gorilla ENSGGOG00000022526 possible_ortholog 11 retrogenes
Gadus morhua ENSGMOG00000014306 ortholog_one2one 1 retrogene
Macropus eugenii ENSMEUG00000004090 possible_ortholog 5 retrogenes
Microcebus murinus ENSMICG00000010469 ortholog_one2one 6 retrogenes
Macaca mulatta ENSMMUG00000031483 possible_ortholog 9 retrogenes
Monodelphis domestica ENSMODG00000005983 possible_ortholog 3 retrogenes
Mustela putorius furo ENSMPUG00000013811 possible_ortholog 3 retrogenes
Mus musculus ENSMUSG00000016559 possible_ortholog 18 retrogenes
Nomascus leucogenys ENSNLEG00000001577 possible_ortholog 2 retrogenes
Otolemur garnettii ENSOGAG00000024312 possible_ortholog 11 retrogenes
Otolemur garnettii ENSOGAG00000025933 possible_ortholog 14 retrogenes
Oreochromis niloticus ENSONIG00000015805 possible_ortholog 7 retrogenes
Procavia capensis ENSPCAG00000004484 possible_ortholog 2 retrogenes
Pongo abelii ENSPPYG00000000168 possible_ortholog 14 retrogenes
Pongo abelii ENSPPYG00000008636 possible_ortholog 1 retrogene
Pan troglodytes ENSPTRG00000002045 possible_ortholog 20 retrogenes
Pteropus vampyrus ENSPVAG00000008459 possible_ortholog 2 retrogenes
Rattus norvegicus ENSRNOG00000003220 possible_ortholog 4 retrogenes
Sarcophilus harrisii ENSSHAG00000005807 possible_ortholog 1 retrogene
Sus scrofa ENSSSCG00000023971 possible_ortholog 2 retrogenes
Tursiops truncatus ENSTTRG00000015889 possible_ortholog 7 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_fcat_674 58.51 68.38
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2. retro_fcat_1251 50.76 93.38
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3. retro_fcat_1532 67.46 88.24
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4. retro_fcat_1533 78.68 99.26
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5. retro_fcat_2011 79.25 77.94
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Download FASTA sequences of all ENSFCAG00000030424 retrocopies