Parental gene:

H3F3A, ENSAMEG00000014588

Aliases:None
Description:H3 histone, family 3A [Source:HGNC Symbol;Acc:4764]
Organism:Panda (Ailuropoda melanoleuca)
Coordinates:GL193481.1:347129..353496(-)


>ENSAMEG00000014588
ATGGCTCGTACAAAGCAGACTGCCCGCAAATCTACCGGTGGTAAAGCACCGAGGAAGCAACTGGCTACAAAAGCCGCTCG
CAAGAGTGCGCCCTCTACTGGAGGGGTGAAGAAACCTCATCGTTACAGGCCTGGTACTGTGGCACTCCGTGAAATTAGAC
GTTATCAGAAGTCCACTGAACTTCTGATCCGCAAACTTCCTTTCCAGCGTCTGGTGCGAGAAATTGCTCAGGACTTCAAA
ACAGATCTGCGCTTCCAGAGTGCAGCTATCGGTGCTTTGCAGGAGGCAAGCGAGGCCTATCTGGTGGGCCTGTTCGAAGA
CACCAACCTGTGTGCTATCCATGCCAAACGTGTCACAATTATGCCAAAAGACATCCAGCTAGCGCGCCGCATACGTGGAG
AACGTGCTTAA

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000009765 within_species_paralog 3 retrogenes
retro_amel_1636, retro_amel_1794, retro_amel_192,
Bos taurus ENSBTAG00000024561 possible_ortholog 3 retrogenes
retro_btau_156, retro_btau_204, retro_btau_47,
Canis familiaris ENSCAFG00000004916 possible_ortholog 2 retrogenes
retro_cfam_1117, retro_cfam_622,
Canis familiaris ENSCAFG00000016119 possible_ortholog 4 retrogenes
retro_cfam_168, retro_cfam_1845, retro_cfam_650, retro_cfam_673,
Erinaceus europaeus ENSEEUG00000013796 possible_ortholog 1 retrogene
retro_eeur_2,
Felis catus ENSFCAG00000003617 possible_ortholog 4 retrogenes
retro_fcat_1085, retro_fcat_1953, retro_fcat_592, retro_fcat_830,
Felis catus ENSFCAG00000030424 possible_ortholog 5 retrogenes
retro_fcat_1251, retro_fcat_1532, retro_fcat_1533, retro_fcat_2011, retro_fcat_674,
Gadus morhua ENSGMOG00000014306 possible_ortholog 1 retrogene
retro_gmor_9,
Macaca mulatta ENSMMUG00000031483 possible_ortholog 9 retrogenes
retro_mmul_108, retro_mmul_147, retro_mmul_201, retro_mmul_213, retro_mmul_215, retro_mmul_286, retro_mmul_337, retro_mmul_346, retro_mmul_7,
Monodelphis domestica ENSMODG00000005983 ortholog_one2one 3 retrogenes
retro_mdom_1037, retro_mdom_1132, retro_mdom_175,
Mustela putorius furo ENSMPUG00000013811 ortholog_one2one 3 retrogenes
retro_mputfur_1159, retro_mputfur_787, retro_mputfur_881,
Nomascus leucogenys ENSNLEG00000001577 possible_ortholog 2 retrogenes
retro_nleu_25, retro_nleu_35,
Otolemur garnettii ENSOGAG00000024312 possible_ortholog 11 retrogenes
retro_ogar_1086, retro_ogar_1790, retro_ogar_1863, retro_ogar_2364, retro_ogar_2463, retro_ogar_2581, retro_ogar_2746, retro_ogar_3415, retro_ogar_478, retro_ogar_842, retro_ogar_955,
Otolemur garnettii ENSOGAG00000025933 possible_ortholog 14 retrogenes
retro_ogar_1285, retro_ogar_1364, retro_ogar_1449, retro_ogar_1575, retro_ogar_1576, retro_ogar_2200, retro_ogar_2316, retro_ogar_2449, retro_ogar_2634, retro_ogar_3235, retro_ogar_42, retro_ogar_733, retro_ogar_937, retro_ogar_952,
Pongo abelii ENSPPYG00000008636 possible_ortholog 1 retrogene
retro_pabe_2662,
Pan troglodytes ENSPTRG00000002045 ortholog_one2one 20 retrogenes
retro_ptro_1045, retro_ptro_1704, retro_ptro_1770, retro_ptro_1867, retro_ptro_1954, retro_ptro_2098, retro_ptro_2183, retro_ptro_2228, retro_ptro_2229, retro_ptro_2230, retro_ptro_2232, retro_ptro_2233, retro_ptro_2363, retro_ptro_279, retro_ptro_2834, retro_ptro_2936, retro_ptro_2978, retro_ptro_300, retro_ptro_3111, retro_ptro_3164,
Pteropus vampyrus ENSPVAG00000008459 possible_ortholog 2 retrogenes
retro_pvam_218, retro_pvam_52,
Tursiops truncatus ENSTTRG00000015889 ortholog_one2one 7 retrogenes
retro_ttru_1094, retro_ttru_1306, retro_ttru_18, retro_ttru_451, retro_ttru_738, retro_ttru_814, retro_ttru_92,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_amel_144 74.24 97.06
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2. retro_amel_570 73.83 77.21
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3. retro_amel_687 70.37 96.32
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4. retro_amel_711 73.81 91.18
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5. retro_amel_903 71.77 88.24
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6. retro_amel_1023 70.99 93.38
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7. retro_amel_1026 70.31 93.38
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Download FASTA sequences of all ENSAMEG00000014588 retrocopies