RetrogeneDB - Parental gene ENSEEUG00000012696 details

                            
>ENSEEUG00000012696
ATGGCGAAGATTAAGGCGAGAGACCTACGCGGGAAGAAGAAGGAGGAGCTGCTGAAGCAGCTGGACGACCTGAAGGTGGA

GCTGTCCCAGCTGCGTGTCGCCAAAGTCACGGGCGGCGCGGCGTCCAAGCTCTCCAAGATCCGAGTGGTTCGCAAATCTA

TTGCTCGAGTTCTCACTGTCATTAACCAGACACAGAAAGAAAACCTCAGGAAATTCTACAAGGGCAAGAAATACAAGCCT

TTGGATCTGCGGCCCAAGAAAACTCGTGCCATGCGTCGCCGGCTCAACAAGCATGAGGAGAACCTCAAGACCAAGAAGCA

GCAGAGGAAGGAACGGCTGTACCCAATGAGGAAGTTTGCTGTCAAAGCCTAA

Library	Parental gene expression (RPM)
SRP017611_brain	92 .50 RPM
SRP017611_kidney	184 .73 RPM
SRP017611_liver	131 .35 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Ailuropoda melanoleuca	ENSAMEG00000016537	ortholog_one2many	12 retrogenes	retro_amel_1010, retro_amel_1180, retro_amel_1341, retro_amel_1686, retro_amel_1746, retro_amel_1844, retro_amel_1887, retro_amel_351, retro_amel_584, retro_amel_819, retro_amel_893, retro_amel_94,
Bos taurus	ENSBTAG00000003205	ortholog_one2many	3 retrogenes	retro_btau_1060, retro_btau_1340, retro_btau_185,
Canis familiaris	ENSCAFG00000020212	ortholog_one2one	7 retrogenes	retro_cfam_1566, retro_cfam_1635, retro_cfam_2180, retro_cfam_294, retro_cfam_529, retro_cfam_738, retro_cfam_995,
Callithrix jacchus	ENSCJAG00000006724	ortholog_one2one	5 retrogenes	retro_cjac_1074, retro_cjac_1308, retro_cjac_1377, retro_cjac_2458, retro_cjac_387,
Cavia porcellus	ENSCPOG00000022811	ortholog_one2one	1 retrogene	retro_cpor_414,
Equus caballus	ENSECAG00000009389	ortholog_one2many	3 retrogenes	retro_ecab_1083, retro_ecab_115, retro_ecab_813,
Echinops telfairi	ENSETEG00000000876	ortholog_one2one	10 retrogenes	retro_etel_1013, retro_etel_1267, retro_etel_1383, retro_etel_1556, retro_etel_1848, retro_etel_1931, retro_etel_303, retro_etel_637, retro_etel_747, retro_etel_942,
Felis catus	ENSFCAG00000030388	ortholog_one2many	5 retrogenes	retro_fcat_1129, retro_fcat_1790, retro_fcat_1954, retro_fcat_397, retro_fcat_782,
Homo sapiens	ENSG00000136942	ortholog_one2one	6 retrogenes	retro_hsap_1233, retro_hsap_326, retro_hsap_3579, retro_hsap_3832, retro_hsap_3867, retro_hsap_4026,
Gorilla gorilla	ENSGGOG00000004111	ortholog_one2many	3 retrogenes	retro_ggor_2581, retro_ggor_351, retro_ggor_966,
Loxodonta africana	ENSLAFG00000010031	ortholog_one2many	3 retrogenes	retro_lafr_128, retro_lafr_300, retro_lafr_642,
Microcebus murinus	ENSMICG00000002922	ortholog_one2one	2 retrogenes	retro_mmur_1502, retro_mmur_215,
Myotis lucifugus	ENSMLUG00000029323	ortholog_one2one	3 retrogenes	retro_mluc_1495, retro_mluc_2392, retro_mluc_969,
Macaca mulatta	ENSMMUG00000005260	ortholog_one2many	5 retrogenes	retro_mmul_1304, retro_mmul_156, retro_mmul_1623, retro_mmul_1912, retro_mmul_265,
Monodelphis domestica	ENSMODG00000019753	ortholog_one2one	1 retrogene	retro_mdom_1039,
Mustela putorius furo	ENSMPUG00000013950	ortholog_one2many	5 retrogenes	retro_mputfur_1136, retro_mputfur_1348, retro_mputfur_1478, retro_mputfur_1484, retro_mputfur_425,
Mus musculus	ENSMUSG00000062997	ortholog_one2many	1 retrogene	retro_mmus_236,
Nomascus leucogenys	ENSNLEG00000017303	ortholog_one2one	7 retrogenes	retro_nleu_1153, retro_nleu_1770, retro_nleu_1850, retro_nleu_1921, retro_nleu_2104, retro_nleu_2836, retro_nleu_953,
Ornithorhynchus anatinus	ENSOANG00000011612	ortholog_one2one	1 retrogene	retro_oana_56,
Oryctolagus cuniculus	ENSOCUG00000002996	ortholog_one2many	4 retrogenes	retro_ocun_200, retro_ocun_238, retro_ocun_451, retro_ocun_791,
Otolemur garnettii	ENSOGAG00000008513	ortholog_one2one	7 retrogenes	retro_ogar_1265, retro_ogar_1271, retro_ogar_1828, retro_ogar_2005, retro_ogar_2253, retro_ogar_2610, retro_ogar_2903,
Ochotona princeps	ENSOPRG00000000406	ortholog_one2one	9 retrogenes	retro_opri_1077, retro_opri_1134, retro_opri_244, retro_opri_273, retro_opri_339, retro_opri_473, retro_opri_565, retro_opri_628, retro_opri_650,
Pongo abelii	ENSPPYG00000019603	ortholog_one2many	7 retrogenes	retro_pabe_1026, retro_pabe_165, retro_pabe_1718, retro_pabe_2948, retro_pabe_3064, retro_pabe_3303, retro_pabe_3304,
Pan troglodytes	ENSPTRG00000021361	ortholog_one2one	6 retrogenes	retro_ptro_2426, retro_ptro_2609, retro_ptro_262, retro_ptro_2635, retro_ptro_2730, retro_ptro_846,
Rattus norvegicus	ENSRNOG00000014272	ortholog_one2many	14 retrogenes	retro_rnor_1254, retro_rnor_126, retro_rnor_147, retro_rnor_1473, retro_rnor_1509, retro_rnor_1768, retro_rnor_1957, retro_rnor_205, retro_rnor_2183, retro_rnor_233, retro_rnor_2618, retro_rnor_2681, retro_rnor_2719, retro_rnor_451,
Sarcophilus harrisii	ENSSHAG00000004756	ortholog_one2one	1 retrogene	retro_shar_775,
Sus scrofa	ENSSSCG00000005595	ortholog_one2one	5 retrogenes	retro_sscr_1168, retro_sscr_214, retro_sscr_553, retro_sscr_679, retro_sscr_905,
Ictidomys tridecemlineatus	ENSSTOG00000007901	ortholog_one2one	1 retrogene	retro_itri_1735,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_eeur_56	64.13	73.98	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_eeur_144	79.41	82.93	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_eeur_217	92.68	100.00	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_eeur_225	91.96	90.24	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_eeur_251	77.38	68.29	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_eeur_319	58.06	73.98	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_eeur_487	80.49	99.19	Please wait, loading	Please wait, loading	Please wait, loading
8.	retro_eeur_533	78.95	90.24	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSEEUG00000012696 retrocopies

Parental gene:	RPL35, ENSEEUG00000012696
Aliases:	None
Description:	ribosomal protein L35 [Source:HGNC Symbol;Acc:10344]
Organism:	*Hedgehog (Erinaceus europaeus)*
Coordinates:	scaffold_340891:5180..9687(+)

Parental gene:

RPL35, ENSEEUG00000012696