Parental gene:

EIF1AX, ENSEEUG00000007518

Aliases:None
Description:eukaryotic translation initiation factor 1A, X-linked [Source:HGNC Symbol;Acc:3250]
Organism:Hedgehog (Erinaceus europaeus)
Coordinates:GeneScaffold_7195:4045..21150(-)


>ENSEEUG00000007518
ATGCCCAAGAATAAAGGTAAAGGAGGTAAAAATAGACGCAGAGGTAAGAACGAAAATGAATCTGAGAAGAGAGAGCTAGT
ATTCAAGGAAGATGGACAAGAGTATGCACAAGTCATCAAAATGTTGGGCAATGGTCGATTAGAAGCAATGTGTTTTGATG
GTGTAAAGAGGTTATGTCACATCAGAGGAAAATTGAGGAAAAAGGTTTGGATAAACACCTCAGACATTATATTGGTTGGT
CTACGAGATTACCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNCTAAAATCAATGAAACTGATACTTTCGGTCCTGGGGATGATGATGAAATTCAGTTTGATGACA
TTGGAGATGATGATGAAGACATTGATGAT

Library Parental gene expression (RPM)
SRP017611_brain 27 .39 RPM
SRP017611_kidney 44 .63 RPM
SRP017611_liver 23 .96 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000017633 ortholog_one2one 3 retrogenes
retro_btau_1293, retro_btau_293, retro_btau_381,
Callithrix jacchus ENSCJAG00000005371 possible_ortholog 1 retrogene
retro_cjac_66,
Homo sapiens ENSG00000173674 ortholog_one2one 2 retrogenes
retro_hsap_1431, retro_hsap_350,
Myotis lucifugus ENSMLUG00000012977 possible_ortholog 2 retrogenes
retro_mluc_250, retro_mluc_3,
Monodelphis domestica ENSMODG00000027820 possible_ortholog 1 retrogene
retro_mdom_274,
Mus musculus ENSMUSG00000067194 possible_ortholog 1 retrogene
retro_mmus_264,
Otolemur garnettii ENSOGAG00000008182 possible_ortholog 1 retrogene
retro_ogar_128,
Pongo abelii ENSPPYG00000020176 ortholog_one2one 1 retrogene
retro_pabe_1185,
Pan troglodytes ENSPTRG00000022504 possible_ortholog 1 retrogene
retro_ptro_978,
Rattus norvegicus ENSRNOG00000005736 possible_ortholog 1 retrogene
retro_rnor_24,
Sorex araneus ENSSARG00000013528 ortholog_one2one 1 retrogene
retro_sara_324,
Sarcophilus harrisii ENSSHAG00000010995 ortholog_one2one 1 retrogene
retro_shar_707,
Sus scrofa ENSSSCG00000029864 possible_ortholog 1 retrogene
retro_sscr_948,
Tursiops truncatus ENSTTRG00000002012 ortholog_one2one 1 retrogene
retro_ttru_1009,
Vicugna pacos ENSVPAG00000009927 ortholog_one2one 4 retrogenes
retro_vpac_47, retro_vpac_531, retro_vpac_550, retro_vpac_590,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_eeur_408 86.11 50.35
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2. retro_eeur_567 100.00 59.44
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3. retro_eeur_686 83.53 58.04
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Download FASTA sequences of all ENSEEUG00000007518 retrocopies