Parental gene:

C18ORF21, ENSCPOG00000025449

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_14:28363226..28368945(-)


>ENSCPOG00000025449
ATGAGGCAGAAGCACTATCTCGAGGCTGCGGCGCGAAGCTTACAGGATAGCTGCCCTGGCCAAGCCCGCTATCTCCTCTG
GACCTACTCTTCGTCACACGATGACAAGAGCACTTTTGAAGAAACGTGTCCGTATTGTTTCCAGTTGTTGGTTCTGGATA
ACTCTCGAGTGCGCCTCAAGCCCAAGGCCAAACTGACACCCAGAATACAGAAACTTCTTAATCGAGAAGCTAGAACTCAT
ACACTTAGTTTTAAAGAAGCAAAAATCGTGAAAAAGTACAGAGACTCCAAAAATGTATTGTCGATTACTTGTAAGACTTG
CAACAGAACAGTTAAACATCATGGTAAAAGTAGAAGCTTTCTGTCAGCGTTGAAGAATGTTCCTGCTACTCCTACAAGTA
AACTCGGCCCAAAGAGACCAGAAAAAAAGACTTCAAGCTCCACAGATGTATCTGATTCCAAAGGCCAGAGCCCAGCGTTC
ATTTTCAGAACACCTCCATCTGGCCAGTCAACACCCATTTGCTCCTCAAAGAGTGGGAGCAAAAGAAAGAAACACTTCTC
TCAGCTAAAAATGCTGCTCAGTCAGAGTGAATCCCAAAAGGATCCAAAAGTAGACTTCAAAAGTTTCTTATCTTCACTGT
GA

Library Parental gene expression (RPM)
SRP017611_brain 5 .87 RPM
SRP017611_kidney 8 .48 RPM
SRP017611_liver 4 .14 RPM
SRP040447_lung 6 .68 RPM
SRP040447_skeletal_muscle 4 .86 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000029548 ortholog_one2one 1 retrogene
retro_cfam_1636,
Callithrix jacchus ENSCJAG00000021041 ortholog_one2one 2 retrogenes
retro_cjac_1030, retro_cjac_2169,
Felis catus ENSFCAG00000000626 ortholog_one2one 1 retrogene
retro_fcat_1717,
Homo sapiens ENSG00000141428 ortholog_one2one 1 retrogene
retro_hsap_3062,
Gorilla gorilla ENSGGOG00000026334 ortholog_one2one 1 retrogene
retro_ggor_2102,
Macaca mulatta ENSMMUG00000018782 ortholog_one2one 1 retrogene
retro_mmul_1876,
Monodelphis domestica ENSMODG00000025605 ortholog_one2many 1 retrogene
retro_mdom_260,
Mus musculus ENSMUSG00000024273 ortholog_one2one 2 retrogenes
retro_mmus_1676, retro_mmus_610,
Nomascus leucogenys ENSNLEG00000006237 ortholog_one2one 1 retrogene
retro_nleu_1655,
Oryctolagus cuniculus ENSOCUG00000028046 ortholog_one2one 2 retrogenes
retro_ocun_1910, retro_ocun_435,
Ochotona princeps ENSOPRG00000011163 ortholog_one2one 2 retrogenes
retro_opri_1222, retro_opri_283,
Pongo abelii ENSPPYG00000009110 ortholog_one2one 1 retrogene
retro_pabe_2536,
Pan troglodytes ENSPTRG00000009973 ortholog_one2one 2 retrogenes
retro_ptro_1981, retro_ptro_2935,
Pteropus vampyrus ENSPVAG00000009174 ortholog_one2one 3 retrogenes
retro_pvam_1086, retro_pvam_1488, retro_pvam_629,
Tupaia belangeri ENSTBEG00000016670 ortholog_one2one 1 retrogene
retro_tbel_4056,
Tarsius syrichta ENSTSYG00000010817 ortholog_one2one 2 retrogenes
retro_tsyr_1675, retro_tsyr_1787,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_1461 95.33 100.00
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Download FASTA sequences of all ENSCPOG00000025449 retrocopies