Parental gene:

C18orf21, ENSCJAG00000021041

Aliases:None
Description:chromosome 18 open reading frame 21 [Source:HGNC Symbol;Acc:28802]
Organism:Marmoset (Callithrix jacchus)
Coordinates:13:73601923..73608788(+)


>ENSCJAG00000021041
ATGAGACAGAAACACTACCTTGAGGCTGCGGCGCGGGGACTGCACGACAGCTGCCCGGGTCAAGCCCGCTATCTCCTCTG
GGCCTACACTTCGTCGCACGATGATAAGAGCACTTTTGAAGAAACGTGTCCATACTGTTTCCAGTTGTTGCTTCTGGATA
ACTCTCGAGTGCGTCTCAAACCCAAAGCCAAGATGACACCCAAAATACAGAAACTTCTTAATCGAGAAGCGAGAAACTAT
ACACTCAGTTTTAAAGAAGCAAAAATTGTCAAAAAGTTCAAAGACTCCAAAAGTGTATTGTTGATCACTTGTAAAACATG
CAACAGGACAGTGAAGCACCATGGTAAAAGCAGAAGCTTTCTAGCAACATTGAAGAGCAGTCCTACCACTCCTACAAGTA
AACTCACCCTGAAAACACCAGAGAGAAGGACTGTAGACCCAAATCGTGATAAGTCTGGTTCCAAAGGCAAGAGTCCAGCA
TTGATTTTCAGAACACCTACATCTGGACAGTCAGTATCTACTTCCTCCTCAAAAAGTATGAGTAAAACAAAGAAACATTT
CTCACAACTAAAAATGTTACTTAGTCAGAATGAATCCCAAAAGAATCCAAAGGTGGACTTCAGAAATTTCTTATCTTCTC
TGAAGGGTGGACCTTGA

Library Parental gene expression (RPM)
SRP051959_colon 5 .39 RPM
SRP051959_heart 5 .56 RPM
SRP051959_kidney 7 .85 RPM
SRP051959_liver 7 .06 RPM
SRP051959_lung 8 .51 RPM
SRP051959_lymph_node 11 .23 RPM
SRP051959_skeletal_muscle 7 .10 RPM
SRP051959_spleen 8 .32 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000029548 ortholog_one2one 1 retrogene
retro_cfam_1636,
Cavia porcellus ENSCPOG00000025449 ortholog_one2one 1 retrogene
retro_cpor_1461,
Felis catus ENSFCAG00000000626 ortholog_one2one 1 retrogene
retro_fcat_1717,
Homo sapiens ENSG00000141428 ortholog_one2one 1 retrogene
retro_hsap_3062,
Gorilla gorilla ENSGGOG00000026334 ortholog_one2one 1 retrogene
retro_ggor_2102,
Macaca mulatta ENSMMUG00000018782 ortholog_one2one 1 retrogene
retro_mmul_1876,
Monodelphis domestica ENSMODG00000025605 ortholog_one2many 1 retrogene
retro_mdom_260,
Mus musculus ENSMUSG00000024273 ortholog_one2one 2 retrogenes
retro_mmus_1676, retro_mmus_610,
Nomascus leucogenys ENSNLEG00000006237 ortholog_one2one 1 retrogene
retro_nleu_1655,
Oryctolagus cuniculus ENSOCUG00000028046 ortholog_one2one 2 retrogenes
retro_ocun_1910, retro_ocun_435,
Ochotona princeps ENSOPRG00000011163 ortholog_one2one 2 retrogenes
retro_opri_1222, retro_opri_283,
Pongo abelii ENSPPYG00000009110 ortholog_one2one 1 retrogene
retro_pabe_2536,
Pan troglodytes ENSPTRG00000009973 ortholog_one2one 2 retrogenes
retro_ptro_1981, retro_ptro_2935,
Pteropus vampyrus ENSPVAG00000009174 ortholog_one2one 3 retrogenes
retro_pvam_1086, retro_pvam_1488, retro_pvam_629,
Tupaia belangeri ENSTBEG00000016670 ortholog_one2one 1 retrogene
retro_tbel_4056,
Tarsius syrichta ENSTSYG00000010817 ortholog_one2one 2 retrogenes
retro_tsyr_1675, retro_tsyr_1787,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1030 90.51 72.48
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2. retro_cjac_2169 69.43 71.10
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Download FASTA sequences of all ENSCJAG00000021041 retrocopies