Parental gene:

COX5A, ENSCPOG00000024832

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_98:4333063..4340592(+)


>ENSCPOG00000024832
ATGCTGGGTACAGCTCTCCGCCGCTGCGCGGTAGCAGCCACTGCCCGTGCTATGCCCCGCGGCTTCCTACAGTCCCCCGC
GACCCTCAGCCCCGTCGCCGCTGTCCTGTCAGCTCGCTGCTATTCCCATGGGTCACATGAGACAGATGAGGAGTTTGATG
CTCGCTGGGTGACATACTTCAACAAGCCAGACATAGATGCCTGGGAGTTGCGTAAAGGGATGAACACACTTGTTGGCTAT
GATCTGGTTCCCGAACCCAAAATCATTGATGCTGCTTTGCGGGCATGCAGACGGTTAAATGATTTTGCTAGTGCTGTTAG
GATCCTAGAGGTGGTTAAGGACAAAGCAGGACCTCATAAGGAAATCTACCCCTATGTCATCCAGGAACTGAGACCAACTC
TGAATGAACTGGGAATCTCCACTCCAGAGGAGCTGGGCCTTGATAAAGTGTAA

Library Parental gene expression (RPM)
SRP017611_brain 94 .27 RPM
SRP017611_kidney 212 .41 RPM
SRP017611_liver 104 .20 RPM
SRP040447_lung 53 .19 RPM
SRP040447_skeletal_muscle 433 .35 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000008643 ortholog_one2one 2 retrogenes
retro_amel_546, retro_amel_706,
Bos taurus ENSBTAG00000017267 ortholog_one2one 1 retrogene
retro_btau_711,
Canis familiaris ENSCAFG00000017977 ortholog_one2many 1 retrogene
retro_cfam_29,
Choloepus hoffmanni ENSCHOG00000006108 ortholog_one2one 4 retrogenes
retro_chof_1291, retro_chof_1434, retro_chof_2330, retro_chof_695,
Callithrix jacchus ENSCJAG00000015613 ortholog_one2many 6 retrogenes
retro_cjac_2567, retro_cjac_3167, retro_cjac_3229, retro_cjac_703, retro_cjac_9, retro_cjac_982,
Felis catus ENSFCAG00000010587 ortholog_one2one 3 retrogenes
retro_fcat_1100, retro_fcat_1201, retro_fcat_253,
Homo sapiens ENSG00000178741 ortholog_one2one 3 retrogenes
retro_hsap_1036, retro_hsap_1337, retro_hsap_1416,
Gorilla gorilla ENSGGOG00000024426 ortholog_one2one 3 retrogenes
retro_ggor_1041, retro_ggor_1096, retro_ggor_817,
Loxodonta africana ENSLAFG00000006266 ortholog_one2one 1 retrogene
retro_lafr_1192,
Macropus eugenii ENSMEUG00000013942 ortholog_one2one 2 retrogenes
retro_meug_1280, retro_meug_784,
Myotis lucifugus ENSMLUG00000013702 ortholog_one2many 1 retrogene
retro_mluc_337,
Macaca mulatta ENSMMUG00000011677 ortholog_one2one 2 retrogenes
retro_mmul_2176, retro_mmul_2255,
Monodelphis domestica ENSMODG00000028168 ortholog_one2one 1 retrogene
retro_mdom_830,
Mustela putorius furo ENSMPUG00000017314 ortholog_one2one 1 retrogene
retro_mputfur_652,
Mus musculus ENSMUSG00000000088 ortholog_one2one 2 retrogenes
retro_mmus_1413, retro_mmus_742,
Nomascus leucogenys ENSNLEG00000014708 ortholog_one2many 4 retrogenes
retro_nleu_1821, retro_nleu_1838, retro_nleu_2647, retro_nleu_909,
Otolemur garnettii ENSOGAG00000005611 ortholog_one2one 5 retrogenes
retro_ogar_1540, retro_ogar_2150, retro_ogar_2432, retro_ogar_2585, retro_ogar_604,
Pongo abelii ENSPPYG00000006652 ortholog_one2many 1 retrogene
retro_pabe_197,
Pan troglodytes ENSPTRG00000007289 ortholog_one2one 3 retrogenes
retro_ptro_706, retro_ptro_914, retro_ptro_969,
Pteropus vampyrus ENSPVAG00000012957 ortholog_one2one 1 retrogene
retro_pvam_438,
Rattus norvegicus ENSRNOG00000018816 ortholog_one2one 1 retrogene
retro_rnor_1867,
Sarcophilus harrisii ENSSHAG00000015941 ortholog_one2one 2 retrogenes
retro_shar_238, retro_shar_422,
Tursiops truncatus ENSTTRG00000008004 ortholog_one2one 2 retrogenes
retro_ttru_161, retro_ttru_765,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_770 79.47 100.00
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2. retro_cpor_970 69.11 82.00
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3. retro_cpor_1248 70.87 68.67
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Download FASTA sequences of all ENSCPOG00000024832 retrocopies