Parental gene:

SSR3, ENSCPOG00000005898

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_8:53755916..53767445(-)


>ENSCPOG00000005898
ATGGCTCCCAAAGGCGGCTCCAAGCAGCAGTCCGAGGAGGACCTGCTCCTGCAGGATTTTAGCCGCAACCTTTCGGCCAA
GTCCTCCGCGCTCTTCTTCGGGAACGCATTCATCGTATCTGCCATCCCCATCTGGTTATATTGGCGAATATGGCACATGG
ATCTTATTCAGTCTGCTGTTCTGTACAGTGTGATGACCTTAGTAAGCACTTACTTGGTAGCCTTTGCATACAAGAATGTA
AAATTCGTTCTCAAGCACAAAGTAGCACAGAAGAGAGAGGATGCTGTTTCTAAAGAAGTGACTCGAAAACTTTCTGAAGC
TGATAATAGAAGGATGTCTCGGAAAGAAAAAGATGAAAGAATCTTGTGGAAGAAGAATGAAGTTGCTGATTATGAAGCTA
CAACATTTTCCATCTTTTATAACAACACTTTGTTCCTGGTCTTGGTCATTGTTGCTTCCTTTTTTATACTGAAGAACTTC
AACCCTACAGTGAACTACATTTTGTCCATAAGTGCTTCATCAGGACTCATCGCCCTCCTGTCAACTGGCTCCAAGTAG

Library Parental gene expression (RPM)
SRP017611_brain 29 .68 RPM
SRP017611_kidney 37 .90 RPM
SRP017611_liver 43 .18 RPM
SRP040447_lung 58 .56 RPM
SRP040447_skeletal_muscle 57 .36 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000003125 ortholog_one2one 1 retrogene
retro_amel_832,
Canis familiaris ENSCAFG00000008870 ortholog_one2one 5 retrogenes
retro_cfam_1296, retro_cfam_1370, retro_cfam_1924, retro_cfam_2029, retro_cfam_2041,
Choloepus hoffmanni ENSCHOG00000001517 ortholog_one2many 1 retrogene
retro_chof_29,
Callithrix jacchus ENSCJAG00000004643 ortholog_one2one 4 retrogenes
retro_cjac_1059, retro_cjac_1503, retro_cjac_2369, retro_cjac_3213,
Dasypus novemcinctus ENSDNOG00000000752 ortholog_one2one 2 retrogenes
retro_dnov_1922, retro_dnov_632,
Homo sapiens ENSG00000114850 ortholog_one2one 1 retrogene
retro_hsap_173,
Gorilla gorilla ENSGGOG00000024038 ortholog_one2one 1 retrogene
retro_ggor_255,
Myotis lucifugus ENSMLUG00000015478 ortholog_one2one 3 retrogenes
retro_mluc_1624, retro_mluc_1728, retro_mluc_2146,
Macaca mulatta ENSMMUG00000016970 ortholog_one2one 1 retrogene
retro_mmul_383,
Otolemur garnettii ENSOGAG00000010589 ortholog_one2one 2 retrogenes
retro_ogar_2089, retro_ogar_3483,
Pongo abelii ENSPPYG00000014233 ortholog_one2one 1 retrogene
retro_pabe_456,
Pan troglodytes ENSPTRG00000015560 ortholog_one2one 1 retrogene
retro_ptro_163,
Tarsius syrichta ENSTSYG00000010578 ortholog_one2one 1 retrogene
retro_tsyr_660,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_826 63.64 64.86
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2. retro_cpor_1243 74.84 85.41
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Download FASTA sequences of all ENSCPOG00000005898 retrocopies