Parental gene: | SSR3, ENSCJAG00000004643 |
| Aliases: | None |
| Description: | signal sequence receptor, gamma (translocon-associated protein gamma) [Source:HGNC Symbol;Acc:11325] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 17:20834164..20849342(+) |
>ENSCJAG00000004643
ATGGCACCCAAAGGCAGTTCCAAACAGCAGTCGGAGGAGGACCTGCTCCTGCAGGATTTCAGCCGCAACCTCTCTGCCAA
GTCCTCCGCGCTCTTTTTCGGAAACGCGTTCATTGTGTCTGCCATCCCCATCTGGTTATACTGGAGAATATGGCATATGG
ACCTTATTCAGTCTGCTGTTTTGTATAGTGTGATGACCCTAGTAAGCACATATTTGGTAGCCTTTGCATACAAGAATGTG
AAATTTGTTCTCAAGCACAAAGTAGCACAGAAGAGGGAGGATGCTGTTTCCAAAGAAGTGACTCGAAAACTTTCTGAAGC
TGATAATAGAAAGATGTCTCGGAAGGAGAAAGATGAAAGAATCCTGTGGAAGAAGAATGAAGTTGCTGATTATGAAGCTA
CAACATTTTCCATCTTCTATAACAACACTCTGTTCCTGGTCTTGGTCATTGTTGCTTCCTTCTTCATATTGAAGAACTTC
AACCCCACAGTGAACTACATTTTGTCCATAAGTGCTTCATCAGGACTCATCGCCCTCCTGTCTACTGGCTCCAAGTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_colon | 58 .38 RPM |
| SRP051959_heart | 46 .50 RPM |
| SRP051959_kidney | 49 .48 RPM |
| SRP051959_liver | 89 .78 RPM |
| SRP051959_lung | 38 .10 RPM |
| SRP051959_lymph_node | 46 .87 RPM |
| SRP051959_skeletal_muscle | 51 .91 RPM |
| SRP051959_spleen | 56 .18 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000003125 | ortholog_one2one | 1 retrogene | |
| Canis familiaris | ENSCAFG00000008870 | ortholog_one2one | 5 retrogenes | |
| Choloepus hoffmanni | ENSCHOG00000001517 | ortholog_one2many | 1 retrogene | |
| Cavia porcellus | ENSCPOG00000005898 | ortholog_one2one | 2 retrogenes | |
| Dasypus novemcinctus | ENSDNOG00000000752 | ortholog_one2one | 2 retrogenes | |
| Homo sapiens | ENSG00000114850 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000024038 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000015478 | ortholog_one2one | 3 retrogenes | |
| Macaca mulatta | ENSMMUG00000016970 | ortholog_one2one | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000010589 | ortholog_one2one | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000014233 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000015560 | ortholog_one2one | 1 retrogene | |
| Tarsius syrichta | ENSTSYG00000010578 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_1059 | 93.55 | 100.00 | Please wait, loading  |
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| 2. | retro_cjac_1503 | 93.42 | 81.62 | Please wait, loading |
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| 3. | retro_cjac_2369 | 91.40 | 100.00 | Please wait, loading |
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| 4. | retro_cjac_3213 | 80.73 | 58.92 | Please wait, loading |
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Download FASTA sequences of all ENSCJAG00000004643 retrocopies